RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PRR35P0CG20 571 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 RPL17P18621 184 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 XRCC1P18887 633 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 GPX3P22352 226 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PSME3P61289 254 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PLD1Q13393 1074 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 IKBKEQ14164 716 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 HABP4Q5JVS0 413 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 UGT3A1Q6NUS8 523 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 GK5Q6ZS86 529 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 LPCAT1Q8NF37 534 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PIP4K2CQ8TBX8 421 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 BADQ92934 168 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 SCLYQ96I15 445 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 MUC3BQ9H195 1237 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 P2RY12Q9H244 342 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PDP2Q9P2J9 529 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CNOT11Q9UKZ1 510 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 UBXN8O00124 270 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CBX4O00257 560 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 GPC4O75487 556 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TSPAN12O95859 305 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 C1RP00736 705 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ENO3P13929 434 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 RPS3P23396 243 aaKnown RBP eCLIP12.14□□□□□ -0.474e-7■□□□□ 10.9
PTPRF-212ENST00000477970 CREMQ03060 361 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CAPRIN2Q6IMN6 1127 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PAQR3Q6TCH7 311 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CERS6Q6ZMG9 384 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 DDX53Q86TM3 631 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TICAM1Q8IUC6 712 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TDHQ8IZJ6 230 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 FUBP1Q96AE4 644 aaKnown RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 MARK4Q96L34 752 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ZNF558Q96NG5 402 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 GKN1Q9NS71 199 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TMEM181Q9P2C4 612 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CD300AQ9UGN4 299 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ZNF510Q9Y2H8 683 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PCDHB1Q9Y5F3 818 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 DNAH12Q6ZR08 3092 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 C2orf78A6NCI8 922 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PDHA1P08559 390 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PIRTP0C851 137 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 UQCRBP14927 111 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 MAPK8P45983 427 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ADGRE1Q14246 886 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CTSL3PQ5NE16 218 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 PRMT9Q6P2P2 845 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TMEM154Q6P9G4 183 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.14□□□□□ -0.473e-7■■■■□ 21.3
PTPRF-212ENST00000477970 ITIH5Q86UX2 942 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 CPXM2Q8N436 756 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 FBXO39Q8N4B4 442 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ADCY4Q8NFM4 1077 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ADAMTS19Q8TE59 1207 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TWIST2Q8WVJ9 160 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 NPAS2Q99743 824 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 FEM1AQ9BSK4 669 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 IL23AQ9NPF7 189 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 RIMS3Q9UJD0 308 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 RNF112Q9ULX5 631 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 MTF2Q9Y483 593 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-212ENST00000477970 ASB3Q9Y575 518 aa12.14□□□□□ -0.47
PTPRF-212ENST00000477970 TYW5A2RUC4 315 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 CLASP2O75122 1294 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 ECI2O75521 394 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 MLYCDO95822 493 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PFKLP17858 780 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 FMO4P31512 558 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 MC4RP32245 332 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 STX1BP61266 288 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 CLCQ05315 142 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 CACNG1Q06432 222 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 MPP7Q5T2T1 576 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 ANKS6Q68DC2 871 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 OR52E8Q6IFG1 317 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 SPATA19Q7Z5L4 167 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 UCMAQ8WVF2 138 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 WBP2Q969T9 261 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 SPAG4Q9NPE6 437 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 IL17CQ9P0M4 197 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 G3BP2Q9UN86 482 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 GOLGA8CPA6NN73 597 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 H0YJX3 145 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 AP1G1O43747 822 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 NRP2O60462 931 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 LAG3P18627 525 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 HMGCLP35914 325 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 EPHB3P54753 998 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 FOXM1Q08050 763 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 TRIM25Q14258 630 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PPP1R3AQ16821 1122 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 AGKQ53H12 422 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PSRC1Q6PGN9 363 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 DNAJB7Q7Z6W7 309 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 CMTR2Q8IYT2 770 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PNPLA1Q8N8W4 532 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 CD200R1Q8TD46 325 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 MICAL1Q8TDZ2 1067 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms