RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KRT7P08729 469 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 H2AFZP0C0S5 128 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GOLGA6DP0CG33 693 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MAN1A1P33908 653 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TSPAN7P41732 249 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CLCNKAP51800 687 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 IFI35P80217 286 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PPIDQ08752 370 aaKnown RBP12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NFKBIBQ15653 356 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SLC18A3Q16572 532 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MANEAQ5SRI9 462 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SLC9A4Q6AI14 798 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 IYDQ6PHW0 289 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DOK6Q6PKX4 331 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 WDR74Q6RFH5 385 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 H2AFVQ71UI9 128 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 VASH2Q86V25 355 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 VSIG1Q86XK7 387 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MAP7D3Q8IWC1 876 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HTR3CQ8WXA8 447 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 EXTL1Q92935 676 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DDA1Q9BW61 102 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SUDS3Q9H7L9 328 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RMI1Q9H9A7 625 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SARS2Q9NP81 518 aaKnown RBP12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GOLGA6AQ9NYA3 693 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TBC1D29Q9UFV1 150 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 UBR5O95071 2799 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PRR19A6NJB7 356 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 STMND1H3BQB6 276 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 AGRPO00253 132 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NUAK1O60285 661 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 JCHAINP01591 159 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ATP1A1P05023 1023 aaKnown RBP12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MX2P20592 715 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 EPHB1P54762 984 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZBTB17Q13105 803 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TBR1Q16650 682 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TMEM164Q5U3C3 297 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GALNT13Q8IUC8 556 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CCDC13Q8IYE1 715 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 AGBL5Q8NDL9 886 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 DNAJC7Q99615 494 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MLPHQ9BV36 600 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 FAM83DQ9H4H8 585 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OCIAD1Q9NX40 245 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KCNK4Q9NYG8 393 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 AKAP7Q9P0M2 348 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 IFNKQ9P0W0 207 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CTTNBP2NLQ9P2B4 639 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 NFKBIL1Q9UBC1 381 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LCMT1Q9UIC8 334 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 B3GALT1Q9Y5Z6 326 aa12.14□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 C1orf232A0A0U1RR37 186 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SSU72P8A0A1W2PR75 194 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 INPP4BO15327 924 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MTA2O94776 668 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CA4P22748 312 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 UGT1A3P35503 534 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CD86P42081 329 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SSR1P43307 286 aaKnown RBP12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC14A2Q15849 920 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MARK2Q7KZI7 788 aaKnown RBP12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TMC3Q7Z5M5 1100 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LPCAT1Q8NF37 534 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 IMP4Q96G21 291 aaKnown RBP12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OLFM3Q96PB7 478 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CARD9Q9H257 536 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MAGEE1Q9HCI5 957 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 HAUS2Q9NVX0 235 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNHIT2Q9UHR6 403 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PILRAQ9UKJ1 303 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PRKAB1Q9Y478 270 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 PCDHB11Q9Y5F2 797 aa12.13□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TRBV23OR9-2A0A075B6M9 112 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 KCNK1O00180 336 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CHUKO15111 745 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TMEM253P0C7T8 217 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 F3P13726 295 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MPSTP25325 297 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CSTF2P33240 577 aaKnown RBP eCLIP12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 EPHA4P54764 986 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 DCDC1P59894 354 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TPM4P67936 248 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CYP4F2P78329 520 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 MC2RQ01718 297 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 HHEXQ03014 270 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 TCEAL1Q15170 157 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SKOR2Q2VWA4 1001 aaPredicted RBP12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 FAM182AQ5T1J6 154 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 LYSMD3Q7Z3D4 306 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ZNF761Q86XN6 746 aaPredicted RBP12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CCNYQ8ND76 341 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 GPR26Q8NDV2 337 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 OR8K1Q8NGG5 319 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 SLC35G2Q8TBE7 412 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 CTNNBL1Q8WYA6 563 aaPredicted RBP12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 ART4Q93070 314 aa12.12□□□□□ -0.47
MSH5-SAPCD1-205ENST00000476085 RTP4Q96DX8 246 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms