RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 CSRP3P50461 194 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 DCDC1P59894 354 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 IFI35P80217 286 aaPredicted RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 MMRN1Q13201 1228 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 TBR1Q16650 682 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 LYSMD3Q7Z3D4 306 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 ARHGAP22Q7Z5H3 698 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 SLC9B2Q86UD5 537 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 BMPERQ8N8U9 685 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 SLC37A2Q8TED4 501 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 PTCD2Q8WV60 388 aaKnown RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 AHCYL2Q96HN2 611 aaKnown RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 ZNF830Q96NB3 372 aaPredicted RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 MLPHQ9BV36 600 aaPredicted RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 RIOK2Q9BVS4 552 aaKnown RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 SLC12A9Q9BXP2 914 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 SPRY4Q9C004 299 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 FAM117AQ9C073 453 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 TRIT1Q9H3H1 467 aaKnown RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 FAM83DQ9H4H8 585 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 CNOT6Q9ULM6 557 aaKnown RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 CHKBQ9Y259 395 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 TMEM98Q9Y2Y6 226 aa13.43□□□□□ -0.26
CHD3-209ENST00000473376 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.43□□□□□ -0.267e-8■■□□□ 11.7
CHD3-209ENST00000473376 HEMK1Q9Y5R4 338 aaPredicted RBP13.43□□□□□ -0.26
CHD3-209ENST00000473376 A6NCN8 305 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 TOX3O15405 576 aaPredicted RBP13.42□□□□□ -0.26
CHD3-209ENST00000473376 SLC28A2O43868 658 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 CLDN7O95471 211 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 CD48P09326 243 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 ANKRD34CP0C6C1 535 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 F3P13726 295 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 MAP4P27816 1152 aaKnown RBP13.42□□□□□ -0.26
CHD3-209ENST00000473376 CSF2RBP32927 897 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 UGT1A3P35503 534 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 ARSDP51689 593 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 MC2RQ01718 297 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 DSC2Q02487 901 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 HHEXQ03014 270 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 PPIDQ08752 370 aaKnown RBP13.42□□□□□ -0.26
CHD3-209ENST00000473376 MAP7Q14244 749 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 IHHQ14623 411 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 SLC18A3Q16572 532 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 CAVIN1Q6NZI2 390 aaKnown RBP13.42□□□□□ -0.26
CHD3-209ENST00000473376 ATG14Q6ZNE5 492 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 CCDC13Q8IYE1 715 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 PQLC3Q8N755 202 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 DTX3LQ8TDB6 740 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 PATE1Q8WXA2 126 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 EXTL1Q92935 676 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 BTBD6Q96KE9 485 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 ZSCAN5AQ9BUG6 496 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 MAGEE1Q9HCI5 957 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 SLC39A1Q9NY26 324 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 PILRAQ9UKJ1 303 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 TENM4Q6N022 2769 aa13.42□□□□□ -0.26
CHD3-209ENST00000473376 C1orf232A0A0U1RR37 186 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 SSU72P8A0A1W2PR75 194 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 LILRA5A6NI73 299 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 SUV39H1O43463 412 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 NUAK1O60285 661 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 PPFIA2O75334 1257 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 GYPCP04921 128 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 HLA-DQB2P05538 268 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 TPM3P06753 285 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 ZFXP17010 805 aaPredicted RBP13.41□□□□□ -0.26
CHD3-209ENST00000473376 ARHGAP25P42331 645 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 SSR1P43307 286 aaKnown RBP13.41□□□□□ -0.26
CHD3-209ENST00000473376 NIPAL4Q0D2K0 466 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 NFKBIBQ15653 356 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 QPCTQ16769 361 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 LRRC38Q5VT99 294 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 BORAQ6PGQ7 559 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 DOK6Q6PKX4 331 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 CEACAM20Q6UY09 585 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 RFLNAQ6ZTI6 216 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 IL22RA1Q8N6P7 574 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 RCBTB1Q8NDN9 531 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 CTNNBL1Q8WYA6 563 aaPredicted RBP13.41□□□□□ -0.26
CHD3-209ENST00000473376 ART4Q93070 314 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 SLC45A3Q96JT2 553 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 RNF157Q96PX1 679 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 WDR24Q96S15 920 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 AGAP2Q99490 1192 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 SLC25A18Q9H1K4 315 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 CBX8Q9HC52 389 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 TRIM39Q9HCM9 518 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 DTLQ9NZJ0 730 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 CTTNBP2NLQ9P2B4 639 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 ZNHIT2Q9UHR6 403 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 CD84Q9UIB8 345 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 TMEM184BQ9Y519 407 aaPredicted RBP13.41□□□□□ -0.26
CHD3-209ENST00000473376 B3GALT1Q9Y5Z6 326 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 ADGRG1Q9Y653 693 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 SPTA1P02549 2419 aa13.41□□□□□ -0.26
CHD3-209ENST00000473376 ZNF891A8MT65 544 aaPredicted RBP13.4□□□□□ -0.26
CHD3-209ENST00000473376 TERTO14746 1132 aaKnown RBP13.4□□□□□ -0.26
CHD3-209ENST00000473376 CHUKO15111 745 aa13.4□□□□□ -0.26
CHD3-209ENST00000473376 KCNJ13O60928 360 aa13.4□□□□□ -0.26
CHD3-209ENST00000473376 ASMTLO95671 621 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms