RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TMEM71Q6P5X7 295 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 CCHCR1Q8TD31 782 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 SLC37A2Q8TED4 501 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 SLC38A3Q99624 504 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 ARHGAP9Q9BRR9 750 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 MLPHQ9BV36 600 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-208ENST00000470076 FAM83DQ9H4H8 585 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 RMI1Q9H9A7 625 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 DTLQ9NZJ0 730 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 PKD2L2Q9NZM6 624 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 ZNHIT2Q9UHR6 403 aa17.35■□□□□ 0.37
COL7A1-208ENST00000470076 ANKRD66B4E2M5 251 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 DNAJC6O75061 913 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 JCHAINP01591 159 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 ATP1A1P05023 1023 aaKnown RBP17.34■□□□□ 0.37
COL7A1-208ENST00000470076 KDELR1P24390 212 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 CSF2RBP32927 897 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 CD86P42081 329 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 SPINT3P49223 89 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 ATP1A2P50993 1020 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 QPCTQ16769 361 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 LINC00303Q3SY05 128 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-208ENST00000470076 HENMT1Q5T8I9 393 aaKnown RBP17.34■□□□□ 0.37
COL7A1-208ENST00000470076 MYO18BQ8IUG5 2567 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 EXD3Q8N9H8 876 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 OR10G6Q8NH81 332 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 EXTL1Q92935 676 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 AHCYL2Q96HN2 611 aaKnown RBP17.34■□□□□ 0.37
COL7A1-208ENST00000470076 RNF157Q96PX1 679 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 WDR24Q96S15 920 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 DDA1Q9BW61 102 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 PACSIN1Q9BY11 444 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 ADGRE3Q9BY15 652 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 ASPSCR1Q9BZE9 553 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 ZMYND15Q9H091 742 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 STN1Q9H668 368 aaKnown RBP17.34■□□□□ 0.37
COL7A1-208ENST00000470076 PDP2Q9P2J9 529 aa17.34■□□□□ 0.37
COL7A1-208ENST00000470076 CNOT6Q9ULM6 557 aaKnown RBP17.34■□□□□ 0.37
COL7A1-208ENST00000470076 TRBV23OR9-2A0A075B6M9 112 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 ZNF487B1APH4 448 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 KCNK1O00180 336 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 DUX1O43812 170 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 MMP2P08253 660 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 IFI35P80217 286 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-208ENST00000470076 PPIDQ08752 370 aaKnown RBP17.33■□□□□ 0.36
COL7A1-208ENST00000470076 CHST15Q7LFX5 561 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-208ENST00000470076 LRRN4Q8WUT4 740 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 RAPGEF5Q92565 580 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 ART4Q93070 314 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 SH3KBP1Q96B97 665 aa17.33■□□□□ 0.36
COL7A1-208ENST00000470076 SARS2Q9NP81 518 aaKnown RBP17.33■□□□□ 0.36
COL7A1-208ENST00000470076 OAS3Q9Y6K5 1087 aaKnown RBP17.33■□□□□ 0.36
COL7A1-208ENST00000470076 FADS2P1A8MWK0 482 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 B4E171 279 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 EML2O95834 649 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 TMEM253P0C7T8 217 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 SFTPCP11686 197 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 SLC2A4P14672 509 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 MPSTP25325 297 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 TSPAN7P41732 249 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 PPM1FP49593 454 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-208ENST00000470076 ARSDP51689 593 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 RAB15P59190 212 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 HHEXQ03014 270 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 WDR74Q6RFH5 385 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-208ENST00000470076 VSIG1Q86XK7 387 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 ZNF761Q86XN6 746 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-208ENST00000470076 PLD5Q8N7P1 536 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 CNTD1Q8N815 330 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 NKD1Q969G9 470 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 HERPUD2Q9BSE4 406 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 XPO4Q9C0E2 1151 aaKnown RBP17.32■□□□□ 0.36
COL7A1-208ENST00000470076 CARD9Q9H257 536 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 DEF6Q9H4E7 631 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 SLC39A1Q9NY26 324 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 TMEM9Q9P0T7 183 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 TBC1D29Q9UFV1 150 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 PRKAB1Q9Y478 270 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 PCYT1BQ9Y5K3 369 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-208ENST00000470076 B3GALT1Q9Y5Z6 326 aa17.32■□□□□ 0.36
COL7A1-208ENST00000470076 SSU72P8A0A1W2PR75 194 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 LRRD1A4D1F6 860 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 SLC28A2O43868 658 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 WT1P19544 449 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-208ENST00000470076 UGT1A3P35503 534 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 ZBTB17Q13105 803 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 MESDQ14696 234 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 ASTE1Q2TB18 679 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-208ENST00000470076 DCAF12Q5T6F0 453 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 SLC9A4Q6AI14 798 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 IYDQ6PHW0 289 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 LYSMD3Q7Z3D4 306 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 SLC9B2Q86UD5 537 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 FAM129CQ86XR2 697 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 AVL9Q8NBF6 648 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 OR8K1Q8NGG5 319 aa17.31■□□□□ 0.36
COL7A1-208ENST00000470076 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-208ENST00000470076 JPH3Q8WXH2 748 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-208ENST00000470076 PMEPA1Q969W9 287 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms