RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	HMCES	Q96FZ2	354 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	ELMO2	Q96JJ3	720 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	NT5C1B	Q96P26	610 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	TBCB	Q99426	244 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	GTPBP4	Q9BZE4	634 aa	Known RBP	5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	ASPSCR1	Q9BZE9	553 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	NOL6	Q9H6R4	1146 aa	Known RBP	5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	WDCP	Q9H6R7	721 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	METTL14	Q9HCE5	456 aa	Known RBP	5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	MLXIPL	Q9NP71	852 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	PLCB1	Q9NQ66	1216 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	ASF1B	Q9NVP2	202 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	UBP1	Q9NZI7	540 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	AKAP7	Q9P0M2	348 aa	Predicted RBP	5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	PDP2	Q9P2J9	529 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	KLHL3	Q9UH77	587 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	DNAI1	Q9UI46	699 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	CNTN6	Q9UQ52	1028 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	POLH	Q9Y253	713 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	NTNG1	Q9Y2I2	539 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	KCTD3	Q9Y597	815 aa		5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	5.27	□□□□□ -1.57
PTPN4-209	ENST00000469511	ANKHD1	Q8IWZ3	2542 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511		A0A1B0GTL3	188 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	PIPSL	A2A3N6	862 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	ARGFX	A6NJG6	315 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TOR1B	O14657	336 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CETN3	O15182	167 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SART1	O43290	800 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	THAP12	O43422	761 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	DAB1	O75553	588 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	RECQL5	O94762	991 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TMCC1	O94876	653 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TIAF1	O95411	115 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	BPNT1	O95861	308 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	GSR	P00390	522 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CEACAM5	P06731	702 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	EPB41	P11171	864 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	PFKFB1	P16118	471 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TNFAIP3	P21580	790 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TBXAS1	P24557	533 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TRIM23	P36406	574 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	FLT3	P36888	993 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	PRCP	P42785	496 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	GNPDA1	P46926	289 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	ME1	P48163	572 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	KIAA1024L	P59773	190 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	KRTAP10-9	P60411	292 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SNRPD1	P62314	119 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SLC6A3	Q01959	620 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SLC20A2	Q08357	652 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	MTM1	Q13496	603 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SQSTM1	Q13501	440 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TRA2A	Q13595	282 aa	Known RBP eCLIP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	PKP1	Q13835	747 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CYTH1	Q15438	398 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	STIL	Q15468	1287 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	UGP2	Q16851	508 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	KRTAP21-3	Q3LHN1	58 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	PLEKHN1	Q494U1	663 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	PTPN20	Q4JDL3	420 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	EXOSC6	Q5RKV6	272 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	JMJD6	Q6NYC1	403 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	FAM199X	Q6PEV8	388 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	LIPI	Q6XZB0	460 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	ZNF517	Q6ZMY9	492 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	RFLNA	Q6ZTI6	216 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	REC114	Q7Z4M0	266 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	ZSCAN30	Q86W11	494 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CAMK1D	Q8IU85	385 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	APLF	Q8IW19	511 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	MCEMP1	Q8IX19	187 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CISD2	Q8N5K1	135 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	C1orf131	Q8NDD1	294 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	UBASH3B	Q8TF42	649 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CT55	Q8WUE5	264 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SNRNP40	Q96DI7	357 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	WDR89	Q96FK6	387 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	INTS4	Q96HW7	963 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SMIM14	Q96QK8	99 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	MED15	Q96RN5	788 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	HAPLN3	Q96S86	360 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SLC25A23	Q9BV35	468 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	C1QTNF7	Q9BXJ2	289 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TMPRSS13	Q9BYE2	586 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TTYH3	Q9C0H2	523 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	TWSG1	Q9GZX9	223 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	MRPL18	Q9H0U6	180 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	CARS2	Q9HA77	564 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	FBXO8	Q9NRD0	319 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SIDT1	Q9NXL6	827 aa	Known RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	LHX3	Q9UBR4	397 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	AJAP1	Q9UKB5	411 aa	Predicted RBP	5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	SUFU	Q9UMX1	484 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	NEU3	Q9UQ49	428 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	ANKRD12	Q6UB98	2062 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	ACAN	P16112	2415 aa		5.26	□□□□□ -1.57
PTPN4-209	ENST00000469511	MASP2	O00187	686 aa		5.25	□□□□□ -1.57
PTPN4-209	ENST00000469511	CACNB4	O00305	520 aa	Predicted RBP	5.25	□□□□□ -1.57
PTPN4-209	ENST00000469511	TNFRSF10C	O14798	259 aa		5.25	□□□□□ -1.57

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