RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MAP10Q9P2G4 905 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 AP4S1Q9Y587 144 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 AP4B1Q9Y6B7 739 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 MKI67P46013 3256 aaKnown RBP8.9□□□□□ -0.99
SYNE1-217ENST00000466159 C2orf78A6NCI8 922 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 BTN3A1O00481 513 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CD160O95971 181 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 C8BP07358 591 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 HGFP14210 728 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 LPOP22079 712 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 MC4RP32245 332 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 POLE2P56282 527 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 RPL26P61254 145 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 ARF5P84085 180 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CDKL1Q00532 357 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 RHDQ02161 417 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 LIN52Q52LA3 116 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 C6orf52Q5T4I8 152 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SLC8B1Q6J4K2 584 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 MARVELD2Q8N4S9 558 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SIDT2Q8NBJ9 832 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SPDYE1Q8NFV5 336 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 LRTOMTQ8WZ04 291 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SEPT8Q92599 483 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SLCO4A1Q96BD0 722 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SCLYQ96I15 445 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CNBD2Q96M20 576 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 VN1R3Q9BXE9 311 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 FAM192AQ9GZU8 254 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 MRPL40Q9NQ50 206 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 POLG2Q9UHN1 485 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 PHF24Q9UPV7 400 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 ARIH1Q9Y4X5 557 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 A0A1B0GVM2 712 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CAPNS1P04632 268 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 FESP07332 822 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CAPN3P20807 821 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 HOXD10P28358 340 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 TUFMP49411 452 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 ILF2Q12905 390 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 TRAF2Q12933 501 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 LCP2Q13094 533 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 BFSP2Q13515 415 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 ZRANB3Q5FWF4 1079 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CTSL3PQ5NE16 218 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SAMD4BQ5PRF9 694 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 ADGRF1Q5T601 910 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 ANKS6Q68DC2 871 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CXorf57Q6NSI4 855 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 UGT3A1Q6NUS8 523 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 HACD2Q6Y1H2 254 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 FAM126BQ8IXS8 530 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 MIER2Q8N344 545 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 CATSPER1Q8NEC5 780 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 EEF1AKMT1Q8WVE0 214 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 TCF12Q99081 682 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 TMEM175Q9BSA9 504 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 HMX1Q9NP08 348 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 PAPOLBQ9NRJ5 636 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 SMPD4Q9NXE4 827 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 MTRRQ9UBK8 725 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 RAB26Q9ULW5 256 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 TBC1D30Q9Y2I9 924 aa8.89□□□□□ -0.99
SYNE1-217ENST00000466159 OAS3Q9Y6K5 1087 aaKnown RBP8.89□□□□□ -0.99
SYNE1-217ENST00000466159 IQCF5A8MTL0 148 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 TMCC1O94876 653 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PGM3O95394 542 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PRAMEF12O95522 483 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 TSPAN12O95859 305 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 C1RP00736 705 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PKMP14618 531 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ZNF26P17031 533 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 LBPP18428 481 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 CHRM3P20309 590 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 MZF1P28698 734 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ALDH7A1P49419 539 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 DIO3P55073 304 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ATP6V0D1P61421 351 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 TRAP1Q12931 704 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 NRF1Q16656 503 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 USP41Q3LFD5 358 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 KLHDC10Q6PID8 442 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 SCIMPQ6UWF3 145 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 HERC6Q8IVU3 1022 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PCYOX1LQ8NBM8 494 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PDZD8Q8NEN9 1154 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 FAM110BQ8TC76 370 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ZNF483Q8TF39 744 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 NAT14Q8WUY8 206 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 EME1Q96AY2 570 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 PLD4Q96BZ4 506 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 CLSTN3Q9BQT9 956 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 MRPL9Q9BYD2 267 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 TRIM8Q9BZR9 551 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 SARS2Q9NP81 518 aaKnown RBP8.88□□□□□ -0.99
SYNE1-217ENST00000466159 TRPM5Q9NZQ8 1165 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ZNF225Q9UK10 706 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 ASB1Q9Y576 335 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 LAMA3Q16787 3333 aa8.88□□□□□ -0.99
SYNE1-217ENST00000466159 MYOCOSA0A1B0GUC4 107 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms