RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DTLQ9NZJ0 730 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 KLHL3Q9UH77 587 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 LUC7L2Q9Y383 392 aaKnown RBP11.48□□□□□ -0.57
USP4-204ENST00000416417 BOD1L1Q8NFC6 3051 aa11.48□□□□□ -0.57
USP4-204ENST00000416417 THRAP10827 490 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 CSTF2P33240 577 aaKnown RBP eCLIP11.47□□□□□ -0.57
USP4-204ENST00000416417 MESDQ14696 234 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 PLA2G4EQ3MJ16 856 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 TMEM164Q5U3C3 297 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 ANKS6Q68DC2 871 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 ALG1LQ6GMV1 187 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 LYSMD3Q7Z3D4 306 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 LRRC49Q8IUZ0 686 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 CCDC13Q8IYE1 715 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 SFRP1Q8N474 314 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 CNTD1Q8N815 330 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 OR4D9Q8NGE8 314 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 NCSTNQ92542 709 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 NKD1Q969G9 470 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 EID2BQ96D98 161 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 AHCYL2Q96HN2 611 aaKnown RBP11.47□□□□□ -0.57
USP4-204ENST00000416417 TSGA13Q96PP4 275 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 SLC38A3Q99624 504 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 ZNF670Q9BS34 389 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 SHOC2Q9UQ13 582 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 HEY1Q9Y5J3 304 aa11.47□□□□□ -0.57
USP4-204ENST00000416417 CYSRT1A8MQ03 144 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 STMND1H3BQB6 276 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 HGSO14964 777 aaPredicted RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 LIFP15018 202 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 ITGB6P18564 788 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 KDELR1P24390 212 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 UGT1A3P35503 534 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 SPINT3P49223 89 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 TPM4P67936 248 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 HHEXQ03014 270 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 PDK2Q15119 407 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 PCSK7Q16549 785 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 HENMT1Q5T8I9 393 aaKnown RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 TMEM71Q6P5X7 295 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 UNC5BQ8IZJ1 945 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 AGBL5Q8NDL9 886 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 FAF2Q96CS3 445 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 MLPHQ9BV36 600 aaPredicted RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 TBC1D10AQ9BXI6 508 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 FAM117AQ9C073 453 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 XPO4Q9C0E2 1151 aaKnown RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 FAM83DQ9H4H8 585 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 APMAPQ9HDC9 416 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 PRDM8Q9NQV8 689 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 ASH1LQ9NR48 2969 aaKnown RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 ATXN10Q9UBB4 475 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 HYOU1Q9Y4L1 999 aa11.46□□□□□ -0.57
USP4-204ENST00000416417 HEMK1Q9Y5R4 338 aaPredicted RBP11.46□□□□□ -0.57
USP4-204ENST00000416417 SDK2Q58EX2 2172 aa11.46□□□□□ -0.58
USP4-204ENST00000416417 LRRD1A4D1F6 860 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 GOLGA6L19H0YKK7 550 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 ZW10O43264 779 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 MTX2O75431 263 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 TNNT1P13805 278 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 ZNF8P17098 575 aaPredicted RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 DYNLT1P63172 113 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 AP1B1Q10567 949 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 LLGL1Q15334 1064 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 IYDQ6PHW0 289 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 CRTC3Q6UUV7 619 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 CACNA2D3Q8IZS8 1091 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 IL22RA1Q8N6P7 574 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 PLD5Q8N7P1 536 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 ZSCAN1Q8NBB4 408 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 GPR26Q8NDV2 337 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 OR10G6Q8NH81 332 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 CTNNBL1Q8WYA6 563 aaPredicted RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 HDAC11Q96DB2 347 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 AGAP3Q96P47 875 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 RNF157Q96PX1 679 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SLC12A9Q9BXP2 914 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 OR2AG1Q9H205 316 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SCHIP1Q9P0W5 487 aaPredicted RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 C3orf70A6NLC5 250 aaPredicted RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 ANKRD66B4E2M5 251 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 F5H423 210 aaPredicted RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 GRID2O43424 1007 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 DUX1O43812 170 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 RAD1O60671 282 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 ITGB2P05107 769 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 KRT7P08729 469 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 H2AFZP0C0S5 128 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 CA4P22748 312 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 CES1P23141 567 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 CD82P27701 267 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 FASLGP48023 281 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 ATP1A2P50993 1020 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SQSTM1Q13501 440 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 TRA2AQ13595 282 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP4-204ENST00000416417 NOMO1Q15155 1222 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 H2AFVQ71UI9 128 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 NLRP8Q86W28 1048 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms