RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 SEMA3AQ14563 771 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 PDCD2Q16342 344 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 ZDHHC20Q5W0Z9 365 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 LDB1Q86U70 411 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 DEFB107AQ8IZN7 70 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 FBXO27Q8NI29 283 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 AGR3Q8TD06 166 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 DDI1Q8WTU0 396 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 CLP1Q92989 425 aaKnown RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 MYO19Q96H55 970 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 LRRC3Q9BY71 257 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 GPR63Q9BZJ6 419 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 ATP13A3Q9H7F0 1226 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 IL17CQ9P0M4 197 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 RNF112Q9ULX5 631 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 ZNF711Q9Y462 761 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 NEMP1O14524 444 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 LIN7AO14910 233 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 UBDO15205 165 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 NVLO15381 856 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 GJB3O75712 270 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 CKMP06732 381 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PDHA1P08559 390 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 CNPP09543 421 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ZNF7P17097 686 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ATP6V1C1P21283 382 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 FMO4P31512 558 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 XIAPP98170 497 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 GRIK2Q13002 908 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 DMC1Q14565 340 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 TAF11Q15544 211 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PTPRNQ16849 979 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 GPR33Q49SQ1 333 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 UNC50Q53HI1 259 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ANKS6Q68DC2 871 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 TXNDC8Q6A555 127 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 METTL2BQ6P1Q9 378 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 LRRC74BQ6ZQY2 392 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 TMC8Q8IU68 726 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 FBXO39Q8N4B4 442 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 POU5F2Q8N7G0 328 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 EFHBQ8N7U6 833 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PTGR2Q8N8N7 351 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 GRIN3AQ8TCU5 1115 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PTERQ96BW5 349 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PHF21BQ96EK2 531 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 EXOC2Q96KP1 924 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 SAMD11Q96NU1 681 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 LYSMD1Q96S90 227 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 NUSAP1Q9BXS6 441 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 MRPL1Q9BYD6 325 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 CEP44Q9C0F1 390 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 CYP4F12Q9HCS2 524 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ASAH2Q9NR71 780 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 POLR3BQ9NW08 1133 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 KLHL42Q9P2K6 505 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 LOC100653049A0A140TA62 436 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 LINC01553A4QN01 128 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 NEMP2A6NFY4 417 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 BBIP1A8MTZ0 92 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 E5RI56 91 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 RFXAPO00287 272 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 CCL22O00626 93 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PRMT5O14744 637 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 MAP3K7O43318 606 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 SNAP91O60641 907 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 TBX10O75333 385 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 KRT34O76011 436 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 KRT36O76013 467 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PIRTP0C851 137 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 GFAPP14136 432 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 HNRNPLP14866 589 aaKnown RBP eCLIP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 KCNA5P22460 613 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 SERPINA4P29622 427 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ABL2P42684 1182 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PSMD8P48556 350 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 MRPL19P49406 292 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 STX1BP61266 288 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 SNRPD1P62314 119 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 LCP2Q13094 533 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 MUM1Q2TAK8 710 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ACCSLQ4AC99 568 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ZRANB3Q5FWF4 1079 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 ZFP1Q6P2D0 407 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PAQR3Q6TCH7 311 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 HACD2Q6Y1H2 254 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 BNC2Q6ZN30 1099 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PIM3Q86V86 326 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 SNX32Q86XE0 403 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 TMEM126BQ8IUX1 230 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 KIAA1958Q8N8K9 716 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 MAB21L3Q8N8X9 362 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PIH1D2Q8WWB5 315 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 DNAJC9Q8WXX5 260 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 DLG3Q92796 817 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 WBP2Q969T9 261 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 NAF1Q96HR8 494 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 BIRC8Q96P09 236 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 SLC25A23Q9BV35 468 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 FKBPLQ9UIM3 349 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms