RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 UTS2BQ765I0 119 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ELMO1Q92556 727 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CNDP2Q96KP4 475 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 MXRA8Q9BRK3 442 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ADAMTS10Q9H324 1103 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 H0YAE9 185 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 POLRMTO00411 1230 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 HBP1O60381 514 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TPSB2P20231 275 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 POLR2JP52435 117 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 RBBP4Q09028 425 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TPSAB1Q15661 275 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 COL28A1Q2UY09 1125 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 CHCHD4Q8N4Q1 142 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 HLA-DQA2P01906 255 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 CYP2A6P11509 494 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PNLIPRP1P54315 467 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 RPL6Q02878 288 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 KHDC1Q4VXA5 237 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 NKAPLQ5M9Q1 402 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PRAMEF17Q5VTA0 474 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 DDX53Q86TM3 631 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF614Q8N883 585 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 LRRN4CLQ8ND94 238 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TERB2Q8NHR7 220 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 SLC39A3Q9BRY0 314 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 CDH1P12830 882 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 USP30Q70CQ3 517 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ILDR2Q71H61 639 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 OXR1Q8N573 874 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 NR4A3Q92570 626 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 NYAP2Q9P242 653 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PPM1BO75688 479 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 KAT7O95251 611 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 MERTKQ12866 999 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 CBWD3Q5JTY5 395 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 CBWD5Q5RIA9 395 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 LLGL2Q6P1M3 1020 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TOMM5Q8N4H5 51 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 SLC44A3Q8N4M1 653 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PHOX2BQ99453 314 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 APBA2Q99767 749 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TBCDQ9BTW9 1192 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 AGXT2Q9BYV1 514 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PPA2Q9H2U2 334 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PDP1Q9P0J1 537 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ACSL5Q9ULC5 683 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PIN4Q9Y237 131 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 CPS1P31327 1500 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 H3BNH8 94 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 L7N2F9 121 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ADGRD2Q7Z7M1 963 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 FATE1Q969F0 183 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PTTG3PQ9NZH4 202 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 DNAJB9Q9UBS3 223 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 MYO9BQ13459 2157 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 NFE2Q16621 373 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ADGRD1Q6QNK2 874 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ZCCHC23Q6ZST2 131 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 BBS12Q6ZW61 710 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 C1QTNF7Q9BXJ2 289 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 MYNNQ9NPC7 610 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ARL15Q9NXU5 204 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TRAPPC13A5PLN9 417 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 TTLL13PA6NNM8 815 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 C4orf46Q504U0 113 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 C10orf120Q5SQS8 335 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 RAVER2Q9HCJ3 691 aaKnown RBP12.84□□□□□ -0.35
COL6A3-206ENST00000409809 PCDHB16Q9NRJ7 776 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 ARL8BQ9NVJ2 186 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 POMPQ9Y244 141 aa12.84□□□□□ -0.35
COL6A3-206ENST00000409809 URADA6NGE7 173 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 IFNA17P01571 189 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 IFNW1P05000 195 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 GABARAPL2P60520 117 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 KLF10Q13118 480 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 LPCAT4Q643R3 524 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 C11orf96Q7Z7L8 435 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 EXO5Q9H790 373 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 TBC1D14Q9P2M4 693 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 TFR2Q9UP52 801 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 PTPRJQ12913 1337 aa12.83□□□□□ -0.35
COL6A3-206ENST00000409809 USP31Q70CQ4 1352 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 A0A1B0GVI7 797 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ARF3P61204 181 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ARF1P84077 181 aaKnown RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CCDC71Q8IV32 467 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CACNA1CQ13936 2221 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ARID1BQ8NFD5 2236 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 SLC19A2O60779 497 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 AKAP3O75969 853 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 C6orf222P0C671 652 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 HTR7P34969 479 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 MLLT6P55198 1093 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 PPP3R1P63098 170 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ISOC1Q96CN7 298 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 INPP4AQ96PE3 977 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 PBDC1Q9BVG4 233 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CCDC106Q9BWC9 280 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ITPAQ9BY32 194 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms