RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CYP4B1P13584 511 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 LBPP18428 481 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 IGFBP6P24592 240 aaPredicted RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SLC9A3P48764 834 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ENPEPQ07075 957 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 INCA1Q0VD86 236 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 MFSD10Q14728 455 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 GPRIN1Q7Z2K8 1008 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 MLPHQ9BV36 600 aaPredicted RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 HPS4Q9NQG7 708 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CDC14AQ9UNH5 594 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PRORSD1PA6NEY8 169 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 A8MV72 311 aaPredicted RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 TOMM70O94826 608 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 VAC14Q08AM6 782 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 IKBKEQ14164 716 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SLC39A12Q504Y0 691 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PTRHD1Q6GMV3 140 aaKnown RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 IL27RAQ6UWB1 636 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CXCL17Q6UXB2 119 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 LPCAT1Q8NF37 534 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PPTC7Q8NI37 304 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SNX27Q96L92 541 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CDK15Q96Q40 435 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.89□□□□□ -0.516e-6■■□□□ 13.9
HMGB1-206ENST00000405805 ATPIF1Q9UII2 106 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 TRMT6Q9UJA5 497 aaKnown RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ANAPC2Q9UJX6 822 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PNMA8BQ9ULN7 279 aaPredicted RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CCDC182A6NF36 153 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PPP6CO00743 305 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 DPYSL4O14531 572 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 AZIN1O14977 448 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 STX7O15400 261 aaKnown RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 TBX18O95935 607 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SLC35E2BP0CK96 405 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ATXN8OSP0DMR3 200 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PCSK6P29122 969 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 IL12AP29459 219 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 LHX1P48742 406 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 RENBPP51606 427 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 DAOAP59103 153 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 MYBPC1Q00872 1141 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CYP2A13Q16696 494 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PTPRNQ16849 979 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF423Q2M1K9 1284 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SLC22A9Q8IVM8 553 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 OR2T34Q8NGX1 318 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 OR2T3Q8NH03 318 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 COPS4Q9BT78 406 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 C9orf16Q9BUW7 83 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ADI1Q9BV57 179 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 TPK1Q9H3S4 243 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 KIF17Q9P2E2 1029 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 IGKV6D-21A0A0A0MT36 114 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 C17orf102A2RUQ5 167 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 A8MT66 165 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PGK1P00558 417 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 EIF2S1P05198 315 aaKnown RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SLC9A5Q14940 896 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SNX17Q15036 470 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PSMD5Q16401 504 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SH2D5Q6ZV89 423 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 PLEKHM3Q6ZWE6 761 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ERI1Q8IV48 349 aaKnown RBP11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CNTD1Q8N815 330 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 GOLM1Q8NBJ4 401 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 VAT1Q99536 393 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ACAT2Q9BWD1 397 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 CASS4Q9NQ75 786 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ITM2CQ9NQX7 267 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 POLE4Q9NR33 117 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF221Q9UK13 617 aa11.89□□□□□ -0.51
HMGB1-206ENST00000405805 SH3PXD2BA1X283 911 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 SOAT2O75908 522 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 GNAO1P09471 354 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 DARSP14868 501 aaKnown RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 KCNA5P22460 613 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 EDNRBP24530 442 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 GLUD2P49448 558 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 UGT2A3Q6UWM9 527 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 USP50Q70EL3 339 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 ITFG1Q8TB96 612 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 NARS2Q96I59 477 aaKnown RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 NSUN5Q96P11 429 aaKnown RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 GIT1Q9Y2X7 761 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 SDHDO14521 159 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 GRID2O43424 1007 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 RAMP2O60895 175 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 MMP3P08254 477 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 RCVRNP35243 200 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 RAD51Q06609 339 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 AASDHQ4L235 1098 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 CHSY3Q70JA7 882 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 CLYBLQ8N0X4 340 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 OR7A2PQ8NGA2 310 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 TWIST2Q8WVJ9 160 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 STARD8Q92502 1023 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 AKTIPQ9H8T0 292 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 TBCCD1Q9NVR7 557 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms