RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CCDC58Q4VC31 144 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF280DQ6N043 979 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 DET1Q7L5Y6 550 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF567Q8N184 647 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 LINC00116Q8NCU8 138 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 OR10Q1Q8NGQ4 319 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 CCDC120Q96HB5 630 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 P2RX7Q99572 595 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 WDCPQ9H6R7 721 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 AKTIPQ9H8T0 292 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 RBM22Q9NW64 420 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 DTLQ9NZJ0 730 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ING4Q9UNL4 249 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 RGPD1P0DJD0 1748 aa9.27□□□□□ -0.92
COL28A1-201ENST00000399429 SULT1C4O75897 302 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SERPINA1P01009 418 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CYBBP04839 570 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 C8BP07358 591 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PSKH1P11801 424 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SLC10A2Q12908 348 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SPP2Q13103 211 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 HSF5Q4G112 596 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 NHSL2Q5HYW2 709 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MZT2BQ6NZ67 158 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CCDC185Q8N715 623 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 GPRASP2Q96D09 838 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 DIRAS2Q96HU8 199 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MRPL9Q9BYD2 267 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 RNF19AQ9NV58 838 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SETD4Q9NVD3 440 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 ERVK13-1Q9NX77 482 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CNTN6Q9UQ52 1028 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SNX4O95219 450 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CHRM5P08912 532 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 RAP2AP10114 183 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 POLR2JP52435 117 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 GEMP55040 296 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 ATP6V0D1P61421 351 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CYP4F8P98187 520 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PGM5Q15124 567 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PSMD5Q16401 504 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PCID2Q5JVF3 399 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 TWF2Q6IBS0 349 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 STYK1Q6J9G0 422 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MPZL3Q6UWV2 235 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 USP43Q70EL4 1123 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 BRINP3Q76B58 766 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 LDB1Q86U70 411 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 LRRC17Q8N6Y2 441 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 OR13J1Q8NGT2 312 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 OR10A6Q8NH74 314 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PMEPA1Q969W9 287 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 FAM163AQ96GL9 167 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MAELQ96JY0 434 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 IL12RB2Q99665 862 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 ZFP14Q9HCL3 533 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 IL37Q9NZH6 218 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 ERVK-18Q9QC07 812 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SNX7Q9UNH6 387 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 TLL2Q9Y6L7 1015 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MICAL3Q7RTP6 2002 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 A0A1W2PRG6 482 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PRR23AA6NEV1 266 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CD3EAPO15446 510 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 STAG3L1P0CL83 205 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 OXTRP30559 389 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 UQCRC1P31930 480 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 TIGD6Q17RP2 521 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MRNIPQ6NTE8 343 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 ERICH5Q6P6B1 374 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SPATC1Q76KD6 591 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 BTLAQ7Z6A9 289 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 QKIQ96PU8 341 aaKnown RBP eCLIP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 WDR83Q9BRX9 315 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 LHX5Q9H2C1 402 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SPON1Q9HCB6 807 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 TIGARQ9NQ88 270 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 MOCS1Q9NZB8 636 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 CPSF3Q9UKF6 684 aaKnown RBP9.27□□□□□ -0.93
COL28A1-201ENST00000399429 KIAA1257Q9ULG3 409 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SLC9A8Q9Y2E8 581 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 PKP3Q9Y446 797 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 C1orf167Q5SNV9 1468 aa9.27□□□□□ -0.93
COL28A1-201ENST00000399429 SPATA31A1Q5TZJ5 1347 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 UNCXA6NJT0 531 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ZBTB24O43167 697 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CPSF4O95639 269 aaKnown RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 JUNP05412 331 aaKnown RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 IL1R1P14778 569 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 GSTM2P28161 218 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CD40LGP29965 261 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 L1CAMP32004 1257 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ACADSBP45954 432 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 RACK1P63244 317 aaKnown RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 RAD51Q06609 339 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 C1DQ13901 141 aaKnown RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SLC36A3Q495N2 470 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 GPR158Q5T848 1215 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SLC26A9Q7LBE3 791 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SPARTQ8N0X7 666 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms