RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 OR10Q1Q8NGQ4 319 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 ROPN1LQ96C74 230 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 ACBD6Q9BR61 282 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SMOXQ9NWM0 555 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 UBA2Q9UBT2 640 aaPredicted RBP16.06■□□□□ 0.16
PCDH1-203ENST00000394536 POLR3HQ9Y535 204 aaPredicted RBP16.06■□□□□ 0.16
PCDH1-203ENST00000394536 BBIP1A8MTZ0 92 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CDK14O94921 469 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 RPL9P32969 192 aaKnown RBP16.05■□□□□ 0.16
PCDH1-203ENST00000394536 SLC11A2P49281 568 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CCT8P50990 548 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 MLLT6P55198 1093 aaPredicted RBP16.05■□□□□ 0.16
PCDH1-203ENST00000394536 SH3BP2P78314 561 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 GNA12Q03113 381 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 ALFQ53S48 1182 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CACHD1Q5VU97 1274 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 C3orf30Q96M34 536 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 OSBPL2Q9H1P3 480 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 TRIP11Q15643 1979 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 NT5C1B-RDH14C9J2C7 533 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CTPS1P17812 591 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 GPR15P49685 360 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 AGTR2P50052 363 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 AP5B1Q2VPB7 878 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 ZNF678Q5SXM1 525 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 KIAA0319Q5VV43 1072 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 BROXQ5VW32 411 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CPNE9Q8IYJ1 553 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 TLR8Q9NR97 1041 aaKnown RBP16.05■□□□□ 0.16
PCDH1-203ENST00000394536 DNAJC15Q9Y5T4 150 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 H3BNH8 94 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 PLOD2O00469 737 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 ATP6V1G1O75348 118 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 ESRRBO95718 433 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 SNAP29O95721 258 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CDK9P50750 372 aaKnown RBP16.05■□□□□ 0.16
PCDH1-203ENST00000394536 RAD23AP54725 363 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CPSF6Q16630 551 aaKnown RBP eCLIP16.05■□□□□ 0.16
PCDH1-203ENST00000394536 GALNT18Q6P9A2 607 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 CARNMT1Q8N4J0 409 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 ATG16L2Q8NAA4 619 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 HAPLN3Q96S86 360 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 NMRK2Q9NPI5 230 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 EXD2Q9NVH0 621 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 PLK2Q9NYY3 685 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 SEPT3Q9UH03 358 aa16.05■□□□□ 0.16
PCDH1-203ENST00000394536 KIAA1217Q5T5P2 1943 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 PRSS51A0A1B0GVH4 220 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 NIPSNAP2O75323 286 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 RPP40O75818 363 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 RSL1D1O76021 490 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 CDK4P11802 303 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ALDH4A1P30038 563 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 MC4RP32245 332 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 MTHFRP42898 656 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 EIF2B2P49770 351 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ZNF157P51786 506 aaPredicted RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 FOXA1P55317 472 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 LINGO4Q6UY18 593 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 TRPV3Q8NET8 790 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 LZICQ8WZA0 190 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 KLHL25Q9H0H3 589 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 VPS28Q9UK41 221 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 EVPLLA8MZ36 301 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 NME4O00746 187 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 CAPN1P07384 714 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ZNF182P17025 639 aaPredicted RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 UNC50Q53HI1 259 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 SLC2A7Q6PXP3 512 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 GALNT5Q7Z7M9 940 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ZNF554Q86TJ5 538 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 LRRC49Q8IUZ0 686 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 SIDT2Q8NBJ9 832 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 DACH2Q96NX9 599 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 SCN3BQ9NY72 215 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ADGRE2Q9UHX3 823 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 VPS9D1Q9Y2B5 631 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 PCDHB9Q9Y5E1 797 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 VPS4BO75351 444 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 FGF1P05230 155 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 TTKP33981 857 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 PCYT1AP49585 367 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 RPL26P61254 145 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 DAB2P98082 770 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 TUSC3Q13454 348 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 RFTN1Q14699 578 aaPredicted RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 HORMAD1Q86X24 394 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ZCCHC7Q8N3Z6 543 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 NKAPQ8N5F7 415 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 C3orf58Q8NDZ4 430 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 GIT1Q9Y2X7 761 aa16.04■□□□□ 0.16
PCDH1-203ENST00000394536 ZNFX1Q9P2E3 1918 aaKnown RBP16.04■□□□□ 0.16
PCDH1-203ENST00000394536 SCN1AP35498 2009 aa16.03■□□□□ 0.16
PCDH1-203ENST00000394536 TLR5O60602 858 aa16.03■□□□□ 0.16
PCDH1-203ENST00000394536 LRATO95237 230 aa16.03■□□□□ 0.16
PCDH1-203ENST00000394536 CPSF4O95639 269 aaKnown RBP16.03■□□□□ 0.16
PCDH1-203ENST00000394536 MLYCDO95822 493 aa16.03■□□□□ 0.16
PCDH1-203ENST00000394536 RHOAP61586 193 aa16.03■□□□□ 0.16
PCDH1-203ENST00000394536 SPIDRQ14159 915 aa16.03■□□□□ 0.16
PCDH1-203ENST00000394536 SIM2Q14190 667 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms