RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 AGBL4Q5VU57 503 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 ATG16L1Q676U5 607 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 ERAP2Q6P179 960 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 CYB5D1Q6P9G0 228 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 NLRP9Q7RTR0 991 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 RABEPKQ7Z6M1 372 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TTC7BQ86TV6 843 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 NUDCD3Q8IVD9 361 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS53-202ENST00000389040 RFWD2Q8NHY2 731 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 ASB12Q8WXK4 309 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 MFSD3Q96ES6 412 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TOE1Q96GM8 510 aaKnown RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 FEM1CQ96JP0 617 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 EXOC2Q96KP1 924 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 KLHL32Q96NJ5 620 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 RBBP8Q99708 897 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TBL1YQ9BQ87 522 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TPSD1Q9BZJ3 242 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 CHRAC1Q9NRG0 131 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 KLC4Q9NSK0 619 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TXLNGQ9NUQ3 528 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 DCTN4Q9UJW0 460 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 RAB23Q9ULC3 237 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 SOX13Q9UN79 622 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 CKAP5Q14008 2032 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 A0A0G2JND7 137 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 A0A1W2PP55 124 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 METTL12A8MUP2 240 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 C10orf142B7Z368 130 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 AREL1O15033 823 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 FZD6O60353 706 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 RNGTTO60942 597 aaKnown RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 UNC5CO95185 931 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 PGLSO95336 258 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 SEMA4FO95754 770 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 BPGMP07738 259 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TPH1P17752 444 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 XPAP23025 273 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 SPRP35270 261 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 ADPRHP54922 357 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TMPRSS15P98073 1019 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 BST1Q10588 318 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 SIM2Q14190 667 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 CHI3L2Q15782 390 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 DBN1Q16643 649 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 HSP90AA5PQ58FG0 334 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 SPDYAQ5MJ70 313 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 KIAA1161Q6NSJ0 714 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 CEP68Q76N32 757 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 STRA8Q7Z7C7 330 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TBC1D1Q86TI0 1168 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 TRIM69Q86WT6 500 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 CAMK1DQ8IU85 385 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 OR6K2Q8NGY2 324 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 OR14C36Q8NHC7 312 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 SPATA22Q8NHS9 363 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 FAM174AQ8TBP5 190 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 KLHL29Q96CT2 875 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 C7orf26Q96N11 449 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 DCDC2Q9UHG0 476 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 CYP8B1Q9UNU6 501 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 PCDHGA5Q9Y5G8 931 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 RAI2Q9Y5P3 530 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 KMT2EQ8IZD2 1858 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 NYNRINQ9P2P1 1898 aaKnown RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 UPK3BL1B0FP48 263 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 UPK3BL2E5RIL1 263 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 ATP5HO75947 161 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 MT-CYBP00156 380 aaPredicted RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 NQO1P15559 274 aaKnown RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 MAGEA12P43365 314 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 GRIA4P48058 902 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 SERPINB8P50452 374 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 ARFIP2P53365 341 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 LIMK2P53671 638 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 GEMP55040 296 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 MAXP61244 160 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 RPS21P63220 83 aaKnown RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 ELF3P78545 371 aaPredicted RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 RPL6Q02878 288 aaKnown RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 PLK5Q496M5 336 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 WDR45BQ5MNZ6 344 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 TEDDM1Q5T9Z0 273 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 N4BP2L1Q5TBK1 243 aaPredicted RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 PMS2CLQ68D20 193 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 ASRGL1Q7L266 308 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 KCNMB4Q86W47 210 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 IPMKQ8NFU5 416 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 DNASE2BQ8WZ79 361 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 ISL2Q96A47 359 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 ARRDC3Q96B67 414 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 SCRN2Q96FV2 425 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 LYSMD1Q96S90 227 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 AGAP2Q99490 1192 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 KIFC1Q9BW19 673 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 TDRD1Q9BXT4 1180 aaKnown RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 SLC6A17Q9H1V8 727 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 C20orf96Q9NUD7 363 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms