RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CTAGE9A4FU28 777 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 NEMP2A6NFY4 417 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 C2orf81A6NN90 581 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 LMO7DNF2Z398 122 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 GAPDHSO14556 408 aaPredicted RBP13.26□□□□□ -0.29
VPS28-202ENST00000377348 STX7O15400 261 aaKnown RBP13.26□□□□□ -0.29
VPS28-202ENST00000377348 PSMD3O43242 534 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 TNFSF14O43557 240 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A9O60656 530 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 APRTP07741 180 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 ANXA6P08133 673 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 ALPPL2P10696 532 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A6P19224 532 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 LPOP22079 712 aaPredicted RBP13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A1P22309 533 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A4P22310 534 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A3P35503 534 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A5P35504 534 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 BASP1P80723 227 aaKnown RBP13.26□□□□□ -0.29
VPS28-202ENST00000377348 TMPRSS15P98073 1019 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 SEPT6Q14141 434 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 POU6F1Q14863 301 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 ELOCQ15369 112 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 CHRNA6Q15825 494 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 CYP1B1Q16678 543 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 ATP13A5Q4VNC0 1218 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 CCDC137Q6PK04 289 aaKnown RBP13.26□□□□□ -0.29
VPS28-202ENST00000377348 ERMP1Q7Z2K6 904 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 GLRX5Q86SX6 157 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 OR4K2Q8NGD2 314 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 APOLD1Q96LR9 279 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 TBATAQ96M53 351 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 PLEKHG4BQ96PX9 1271 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 CDH19Q9H159 772 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A7Q9HAW7 530 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A10Q9HAW8 530 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 UGT1A8Q9HAW9 530 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 FKBPLQ9UIM3 349 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 PRKAB1Q9Y478 270 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 SAR1BQ9Y6B6 198 aa13.26□□□□□ -0.29
VPS28-202ENST00000377348 LY6G6EA0A0G2JKS1 128 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 GLYATL1P3A0A0U1RQE8 302 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 CCDC78A2IDD5 438 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 ERI2A8K979 691 aaKnown RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 CCL22O00626 93 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 LDB2O43679 373 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 DNAJC6O75061 913 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 PHF2O75151 1096 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 MTX2O75431 263 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 SUN1O94901 812 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 SLC25A14O95258 325 aaPredicted RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 CRTAMO95727 393 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 TOP3BO95985 862 aaKnown RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 KRT14P02533 472 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 IVLP07476 585 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 AK4P27144 223 aaPredicted RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 ZNF140P52738 457 aaPredicted RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 KHDC1Q4VXA5 237 aaKnown RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 CCDC38Q502W7 563 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 HS1BP3Q53T59 392 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 CERCAMQ5T4B2 595 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 PPP1R21Q6ZMI0 780 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 TAF8Q7Z7C8 310 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 LINC00523Q86TU6 105 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 NRROSQ86YC3 692 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 CREG2Q8IUH2 290 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 SFTPA2Q8IWL1 248 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 FSTL5Q8N475 847 aaPredicted RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 DNAAF3Q8N9W5 541 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 GLYATL1Q969I3 302 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 DNAJC1Q96KC8 554 aaKnown RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 DUSP23Q9BVJ7 150 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 ATXN10Q9UBB4 475 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 FEZ2Q9UHY8 353 aaPredicted RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 DOLKQ9UPQ8 538 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 GPSM3Q9Y4H4 160 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 ST14Q9Y5Y6 855 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 U3KQA8 63 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 COL5A1P20908 1838 aaPredicted RBP13.25□□□□□ -0.29
VPS28-202ENST00000377348 CEP295Q9C0D2 2601 aa13.25□□□□□ -0.29
VPS28-202ENST00000377348 GOLGA4Q13439 2230 aaKnown RBP13.24□□□□□ -0.29
VPS28-202ENST00000377348 MYLKQ15746 1914 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 TCRBV7S3A2A0A539 114 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 TPP1O14773 563 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 ADRB1P08588 477 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 ZNF8P17098 575 aaPredicted RBP13.24□□□□□ -0.29
VPS28-202ENST00000377348 ADCY8P40145 1251 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 ACADVLP49748 655 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 DAB2P98082 770 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 CDH17Q12864 832 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 FOXC1Q12948 553 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 GPS1Q13098 491 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 PYCR3Q53H96 274 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 C6orf132Q5T0Z8 1188 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 ZDHHC20Q5W0Z9 365 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 PDPK2PQ6A1A2 396 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 ADGRG6Q86SQ4 1221 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 GKN2Q86XP6 184 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 GALNT13Q8IUC8 556 aa13.24□□□□□ -0.29
VPS28-202ENST00000377348 PHYKPLQ8IUZ5 450 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms