RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 C16orf87Q6PH81 154 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 SCIMPQ6UWF3 145 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 GALNT7Q86SF2 657 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 HMCESQ96FZ2 354 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 FANCEQ9HB96 536 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 TMEM165Q9HC07 324 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 INTS7Q9NVH2 962 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 A0A1W2PP18 115 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 SUPT3HB4E1H0 165 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 K7EPI3 171 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 PAPSS2O95340 614 aaPredicted RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 FUCA1P04066 466 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 OCM2P0CE71 109 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 OCMP0CE72 109 aaPredicted RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 HAPLN1P10915 354 aaPredicted RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 SLC2A3P11169 496 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 HRH2P25021 359 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 SHMT2P34897 504 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 KCNK10P57789 538 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 RCAN2Q14206 197 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 FSCN1Q16658 493 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 TIGD2Q4W5G0 525 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 PRAMEF19Q5SWL8 479 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 CCNYL2Q5T2Q4 361 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 PTRH1Q86Y79 214 aaKnown RBP16.31■□□□□ 0.2
SDC4-201ENST00000372733 TBC1D21Q8IYX1 336 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 CENPSQ8N2Z9 138 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 TERB1Q8NA31 727 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 DDHD1Q8NEL9 900 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 ATOH8Q96SQ7 321 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 C1orf50Q9BV19 199 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 COQ6Q9Y2Z9 468 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 CORINQ9Y5Q5 1042 aa16.31■□□□□ 0.2
SDC4-201ENST00000372733 TRIM64BA6NI03 449 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 LDB2O43679 373 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 CRCPO75575 148 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 C1RP00736 705 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 PRSS56P0CW18 603 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 MAP4P27816 1152 aaKnown RBP16.3■□□□□ 0.2
SDC4-201ENST00000372733 ZFP36L2P47974 494 aaKnown RBP16.3■□□□□ 0.2
SDC4-201ENST00000372733 UFM1P61960 85 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 OR13F1Q8NGS4 319 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 MUS81Q96NY9 551 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 ASB2Q96Q27 587 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 C8orf4Q9NR00 106 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 OSER1Q9NX31 292 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 UXTQ9UBK9 157 aaPredicted RBP16.3■□□□□ 0.2
SDC4-201ENST00000372733 H0Y858 1186 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 CPNE6O95741 557 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 GOT2P00505 430 aaKnown RBP16.3■□□□□ 0.2
SDC4-201ENST00000372733 PRDX3P30048 256 aaKnown RBP16.3■□□□□ 0.2
SDC4-201ENST00000372733 SCNN1GP51170 649 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 ADAM17P78536 824 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 CLCQ05315 142 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 COQ5Q5HYK3 327 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 COLGALT2Q8IYK4 626 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 PAPD5Q8NDF8 572 aaKnown RBP16.3■□□□□ 0.2
SDC4-201ENST00000372733 HASPINQ8TF76 798 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 SGCDQ92629 289 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 BIRC7Q96CA5 298 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 RNF145Q96MT1 663 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 CHID1Q9BWS9 393 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 SMOC2Q9H3U7 446 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 TLR9Q9NR96 1032 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 IKZF3Q9UKT9 509 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 ARL5AQ9Y689 179 aa16.3■□□□□ 0.2
SDC4-201ENST00000372733 FUOMA2VDF0 154 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ALBP02768 609 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 CYBBP04839 570 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 THP07101 528 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 PIRTP0C851 137 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 PORP16435 677 aaPredicted RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 CCNA2P20248 432 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 MAGEA10P43363 369 aaPredicted RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 CRYBB1P53674 252 aaPredicted RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 OR4D2P58180 307 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 GNA12Q03113 381 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 RELAQ04206 551 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 LCP2Q13094 533 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ZNF773Q6PK81 442 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ITIH5Q86UX2 942 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 SLC15A4Q8N697 577 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 BPIFB6Q8NFQ5 453 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 OSCP1Q8WVF1 389 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ARMC7Q9H6L4 198 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 AGO3Q9H9G7 860 aaKnown RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 AIG1Q9NVV5 245 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 SELENONQ9NZV5 590 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 MAGED1Q9Y5V3 778 aaPredicted RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 TNPO2O14787 897 aaKnown RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 ATXN1LP0C7T5 689 aaKnown RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 BRCC3P46736 316 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 PIK3R6Q5UE93 754 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 MARC1Q5VT66 337 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ZNF467Q7Z7K2 595 aaPredicted RBP16.29■□□□□ 0.2
SDC4-201ENST00000372733 LRRTM3Q86VH5 581 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 BLOC1S5Q8TDH9 187 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 TINF2Q9BSI4 451 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 MUC13Q9H3R2 512 aa16.29■□□□□ 0.2
SDC4-201ENST00000372733 ABHD16BQ9H3Z7 469 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms