RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PEX11BO96011 259 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 BMP2P12643 396 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MTHFD2P13995 350 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ITGB6P18564 788 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ELK4P28324 431 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ALDH3B2P48448 385 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 EMP3P54852 163 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MTPNP58546 118 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 PURAQ00577 322 aaKnown RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 PTPRNQ16849 979 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 FGD3Q5JSP0 725 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 SLC2A7Q6PXP3 512 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 CLEC4FQ8N1N0 589 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ANKFN1Q8N957 763 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 KLHDC9Q8NEP7 349 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 TOP1MTQ969P6 601 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ROPN1LQ96C74 230 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MTG1Q9BT17 334 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 HGH1Q9BTY7 390 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 TRMOQ9BU70 441 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 C9orf16Q9BUW7 83 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 VPS45Q9NRW7 570 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 CD274Q9NZQ7 290 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 SUN2Q9UH99 717 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 SARDHQ9UL12 918 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF236Q9UL36 1845 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 A0A0D9SEW6 157 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 DLGAP1O14490 977 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 SYNCRIPO60506 623 aaKnown RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 IGLV3-25P01717 112 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 BNIP3Q12983 259 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 C18orf21Q32NC0 220 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 MANEALQ5VSG8 457 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ANKS6Q68DC2 871 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 TBPL2Q6SJ96 375 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 KCTD8Q6ZWB6 473 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ADGRG5Q8IZF4 528 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 CENPNQ96H22 339 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 PARK7Q99497 189 aaKnown RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 HOPXQ9BPY8 73 aaPredicted RBP12.07□□□□□ -0.48
CLIP3-201ENST00000360535 ING2Q9H160 280 aa12.07□□□□□ -0.48
CLIP3-201ENST00000360535 OR1I1O60431 355 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 SNX2O60749 519 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 NIPSNAP2O75323 286 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ECI2O75521 394 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 OR4F21O95013 312 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 CLCN2P51788 898 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 DGKQP52824 942 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 IST1P53990 364 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF33AQ06730 810 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 TRAF2Q12933 501 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 MAP2K5Q13163 448 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 LDLRAP1Q5SW96 308 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 DUS1LQ6P1R4 473 aaKnown RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 OR7D4Q8NG98 312 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 SLC30A3Q99726 388 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ASB1Q9Y576 335 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 J3QRK9 145 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 HAS3O00219 553 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 CYBBP04839 570 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 CD247P20963 164 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ACADVLP49748 655 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 NRG1Q02297 640 aaPredicted RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 PIGFQ07326 219 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 SGO1Q5FBB7 561 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ZRANB3Q5FWF4 1079 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 STK32CQ86UX6 486 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF280BQ86YH2 543 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 SIDT2Q8NBJ9 832 aaKnown RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 GTF3C2Q8WUA4 911 aaPredicted RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 FBXL8Q96CD0 374 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 L3HYPDHQ96EM0 354 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 SEPT5Q99719 369 aaPredicted RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 KATNAL1Q9BW62 490 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 AGPAT4Q9NRZ5 378 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 EIF2B4Q9UI10 523 aaKnown RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ZMYM5Q9UJ78 669 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ANAPC2Q9UJX6 822 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 NOD1Q9Y239 953 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 GIT1Q9Y2X7 761 aa12.06□□□□□ -0.48
CLIP3-201ENST00000360535 PRRC2BQ5JSZ5 2229 aaKnown RBP12.06□□□□□ -0.48
CLIP3-201ENST00000360535 ATXN1LP0C7T5 689 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 DNAJB1P25685 340 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 RPL9P32969 192 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PSMD8P48556 350 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 CCR3P51677 355 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 OR4D2P58180 307 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ATP6V0D1P61421 351 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 NAA20P61599 178 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ATP1A4Q13733 1029 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 USP41Q3LFD5 358 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PYCR3Q53H96 274 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TAF2Q6P1X5 1199 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TAS2R42Q7RTR8 314 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PARP8Q8N3A8 854 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TRPV3Q8NET8 790 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 BPIFB6Q8NFQ5 453 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ARRDC2Q8TBH0 407 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 GIPC3Q8TF64 312 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 FBXO32Q969P5 355 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms