RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TOP1MTQ969P6 601 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 VPS9D1Q9Y2B5 631 aa20.71■□□□□ 0.91
CCDC88B-203ENST00000359902 RNASEH2AO75792 299 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 GNRH1P01148 92 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 PYGLP06737 847 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 CCL23P55773 120 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 PLD1Q13393 1074 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 KIF19Q2TAC6 998 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 ANKS6Q68DC2 871 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 NCEH1Q6PIU2 408 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 REM2Q8IYK8 340 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TTC30BQ8N4P2 665 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 SEMA4BQ9NPR2 832 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 GBF1Q92538 1859 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 A0A0J9YYE9 177 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 A0A0U1RQS6 177 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 NPEPPSL1A6NEC2 478 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 SYCE1LA8MT33 242 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TXNDC9O14530 226 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 DENRO43583 198 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 PQBP1O60828 265 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 NIPSNAP2O75323 286 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TSPAN12O95859 305 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 C8BP07358 591 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 RPS17P08708 135 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 LINC00032P0C843 101 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TTPAP49638 278 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TRAP1Q12931 704 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 GRM2Q14416 872 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TLR1Q15399 786 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 CTSL3PQ5NE16 218 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 IL23RQ5VWK5 629 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 EP400NLQ6ZTU2 488 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 RETREG3Q86VR2 466 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 TMEM102Q8N9M5 508 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 CATSPER1Q8NEC5 780 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 ATP6V1E2Q96A05 226 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 HSFX1Q9UBD0 423 aa20.7■□□□□ 0.9
CCDC88B-203ENST00000359902 BTN3A1O00481 513 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 STX7O15400 261 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 KLK8O60259 260 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 VPS26AO75436 327 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 MZF1P28698 734 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 NME5P56597 212 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 TAF12Q16514 161 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 SIDT2Q8NBJ9 832 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 SMPD4Q9NXE4 827 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 LHX3Q9UBR4 397 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 BTRCQ9Y297 605 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 FNDC3AQ9Y2H6 1198 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 YIPF1Q9Y548 306 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 DNAJA2O60884 412 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 CXCL10P02778 98 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 CD9P21926 228 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 RHDQ02161 417 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 ZRANB3Q5FWF4 1079 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 SAMD4BQ5PRF9 694 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 UGT2A3Q6UWM9 527 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 ROPN1LQ96C74 230 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 TUBGCP3Q96CW5 907 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 TRMT2BQ96GJ1 504 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 SLC39A3Q9BRY0 314 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 C1QTNF3Q9BXJ4 246 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 MAP10Q9P2G4 905 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 POLG2Q9UHN1 485 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 STOML2Q9UJZ1 356 aa20.69■□□□□ 0.9
CCDC88B-203ENST00000359902 STX16O14662 325 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 SCAMP3O14828 347 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 LBPP18428 481 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 AGTR2P50052 363 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 ECT2LQ008S8 904 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 DEFB115Q30KQ5 88 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 ZNF783Q6ZMS7 281 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 MIER2Q8N344 545 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 EEF1AKMT1Q8WVE0 214 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 GBP5Q96PP8 586 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 TRAPPC9Q96Q05 1148 aa20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 TRMT6Q9UJA5 497 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-203ENST00000359902 NCF1BA6NI72 391 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 BBIP1A8MTZ0 92 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 NCF1CA8MVU1 366 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 H7C0S8 307 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 PFDN6O15212 129 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 TBL1XO60907 577 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 HGFP14210 728 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 NCF1P14598 390 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 CLCN4P51793 760 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 TPGS2Q68CL5 300 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 DEFB128Q7Z7B8 93 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 HERC6Q8IVU3 1022 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 CARNMT1Q8N4J0 409 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 PCYOX1LQ8NBM8 494 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 CD200R1Q8TD46 325 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 ZFRQ96KR1 1074 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 FEM1AQ9BSK4 669 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 HACD3Q9P035 362 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 AP4S1Q9Y587 144 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 H0Y626 953 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 NR5A2O00482 541 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms