RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PPM1JQ5JR12 505 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 RBM20Q5T481 1227 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 ALG1LQ6GMV1 187 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SYT13Q7L8C5 426 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SERPINA9Q86WD7 417 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CYP4X1Q8N118 509 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ARL8AQ96BM9 186 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 NUS1Q96E22 293 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CYTH2Q99418 400 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 GABRG3Q99928 467 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SELENOSQ9BQE4 189 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CCDC77Q9BR77 488 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 LGR4Q9BXB1 951 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 OR2AG1Q9H205 316 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CCDC68Q9H2F9 335 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 RABEP2Q9H5N1 569 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 IL17CQ9P0M4 197 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 FBXO5Q9UKT4 447 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 FADS3Q9Y5Q0 445 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 KRT87PA6NCN2 255 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 RGS16O15492 202 aaPredicted RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 SPINT1O43278 529 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ATG13O75143 517 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 RPP40O75818 363 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 EPOP01588 193 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 HMGCLP35914 325 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SPINT3P49223 89 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ATP1A2P50993 1020 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 HEATR4Q86WZ0 1026 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SLC41A1Q8IVJ1 513 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ECHDC3Q96DC8 303 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SERAC1Q96JX3 654 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 PKD2L2Q9NZM6 624 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 RABGEF1Q9UJ41 708 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 NOVA2Q9UNW9 492 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 ARHGEF17Q96PE2 2063 aaPredicted RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 A0A1W2PPM1 405 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 TRIM49D1C9J1S8 452 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 E5RI56 91 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 SHOX2O60902 331 aaPredicted RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 NIPSNAP2O75323 286 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 ITGALP20701 1170 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 SPAM1P38567 509 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 SLC12A2P55011 1212 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 ZNF844Q08AG5 666 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 ELP6Q0PNE2 266 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 RALGDSQ12967 914 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 PEX6Q13608 980 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 FGL2Q14314 439 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 GRM3Q14832 879 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 HSP90B2PQ58FF3 399 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 CEP68Q76N32 757 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 CCDC63Q8NA47 563 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 TMIEQ8NEW7 156 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 PPP1R2P1Q96PQ5 205 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 NELL2Q99435 816 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 MAGEE1Q9HCI5 957 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 PCMTD2Q9NV79 361 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 UTP6Q9NYH9 597 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 ZNHIT2Q9UHR6 403 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 PSMD13Q9UNM6 376 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 ZFR2Q9UPR6 939 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 CFAP20Q9Y6A4 193 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 R4GN57 208 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 THADAQ6YHU6 1953 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 FAM237BA0A1B0GVD1 139 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 WDR91A4D1P6 747 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 FADS2P1A8MWK0 482 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 SNX2O60749 519 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 SDC3O75056 442 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 APBB3O95704 486 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 AHSGP02765 367 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 MLNP12872 115 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 RPL10P27635 214 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 MAGEA3P43357 314 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 ZNF140P52738 457 aaPredicted RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 MGAT5Q09328 741 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 HSPA14Q0VDF9 509 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 USP10Q14694 798 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 WSCD2Q2TBF2 565 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 KHDC1Q4VXA5 237 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 PTRHD1Q6GMV3 140 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 TRMT10CQ7L0Y3 403 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 SPEM1Q8N4L4 309 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 STYXQ8WUJ0 223 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 PTCD2Q8WV60 388 aaKnown RBP9.15□□□□□ -0.94
USP4-202ENST00000351842 BIRC7Q96CA5 298 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 KIFC1Q9BW19 673 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 SLC17A9Q9BYT1 436 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 ACBD3Q9H3P7 528 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 TM7SF3Q9NS93 570 aa9.15□□□□□ -0.94
USP4-202ENST00000351842 OTOGLQ3ZCN5 2332 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 WDFY3Q8IZQ1 3526 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 BHMG1C9JSJ3 638 aaPredicted RBP9.14□□□□□ -0.95
USP4-202ENST00000351842 USP1O94782 785 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 MYZAPP0CAP1 466 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 STX2P32856 288 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 HADHAP40939 763 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 MAGEA6P43360 314 aa9.14□□□□□ -0.95
USP4-202ENST00000351842 LRRC14Q15048 493 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms