RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 SLC46A2Q9BY10 475 aa13.03□□□□□ -0.32
CPNE1-201ENST00000317677 SMG9Q9H0W8 520 aaKnown RBP13.03□□□□□ -0.32
CPNE1-201ENST00000317677 ARMCX1Q9P291 453 aa13.03□□□□□ -0.32
CPNE1-201ENST00000317677 STK39Q9UEW8 545 aa13.03□□□□□ -0.32
CPNE1-201ENST00000317677 CLEC4EQ9ULY5 219 aa13.03□□□□□ -0.32
CPNE1-201ENST00000317677 LINC01553A4QN01 128 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 MROH6A6NGR9 719 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 CCL22O00626 93 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 AURKAO14965 403 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 LDB2O43679 373 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 CLASP2O75122 1294 aaKnown RBP13.02□□□□□ -0.32
CPNE1-201ENST00000317677 MOSPD3O75425 235 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 RFPL2O75678 378 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 ESRRBO95718 433 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 C1RP00736 705 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 C8BP07358 591 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 HMOX2P30519 316 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 CPA2P48052 419 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 TRPC1P48995 793 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 ARSDP51689 593 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 IRF9Q00978 393 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 SMUG1Q53HV7 270 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 N4BP2L1Q5TBK1 243 aaPredicted RBP13.02□□□□□ -0.32
CPNE1-201ENST00000317677 LINGO4Q6UY18 593 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 CLEC14AQ86T13 490 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 BBS7Q8IWZ6 715 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 CARNMT1Q8N4J0 409 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 DDHD1Q8NEL9 900 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 MAFAQ8NHW3 353 aaPredicted RBP13.02□□□□□ -0.32
CPNE1-201ENST00000317677 PPP4R1Q8TF05 950 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 SREK1Q8WXA9 508 aaKnown RBP13.02□□□□□ -0.32
CPNE1-201ENST00000317677 MRPS31Q92665 395 aaKnown RBP13.02□□□□□ -0.32
CPNE1-201ENST00000317677 TCEAL4Q96EI5 215 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 DCUN1D1Q96GG9 259 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 FEM1CQ96JP0 617 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 GCNAQ96QF7 691 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 SMIM14Q96QK8 99 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 DRC3Q9H069 523 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 WWP1Q9H0M0 922 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 GIN1Q9NXP7 522 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 TMEM216Q9P0N5 145 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 SIRPGQ9P1W8 387 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 TXNDC16Q9P2K2 825 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 SEPT3Q9UH03 358 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 YBX2Q9Y2T7 364 aaKnown RBP13.02□□□□□ -0.32
CPNE1-201ENST00000317677 SPO11Q9Y5K1 396 aa13.02□□□□□ -0.32
CPNE1-201ENST00000317677 HEATR9A2RTY3 570 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CBX4O00257 560 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PLIN3O60664 434 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CNOT3O75175 753 aaKnown RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CRTAMO95727 393 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 GLUD1P00367 558 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PRLP01236 227 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CKMP06732 381 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 BPGMP07738 259 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 MYL4P12829 197 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 ATP6V1B1P15313 513 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CDH3P22223 829 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 SLC1A2P43004 574 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 STT3AP46977 705 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PTPRCAPQ14761 206 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 ZNF789Q5FWF6 425 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CCDC149Q6ZUS6 474 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 TICAM1Q8IUC6 712 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 LSM14AQ8ND56 463 aaKnown RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 TTC16Q8NEE8 873 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 SHKBP1Q8TBC3 707 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 SLC26A7Q8TE54 656 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 C7orf26Q96N11 449 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 GPR22Q99680 433 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 SLC2A11Q9BYW1 496 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 MUC3BQ9H195 1237 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 ZNF395Q9H8N7 513 aaPredicted RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CFAP97Q9P2B7 532 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 DNMT3BQ9UBC3 853 aaKnown RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CCDC195A0A1B0GUA6 201 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 GLRA3O75311 464 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 FUCA1P04066 466 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PROCP04070 461 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 SERPINA6P08185 405 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PIRTP0C851 137 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 TYK2P29597 1187 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CSKP41240 450 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 TUBA4AP68366 448 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 HSF5Q4G112 596 aaPredicted RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 ATG14Q6ZNE5 492 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 HTR3DQ70Z44 454 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 HJURPQ8NCD3 748 aaPredicted RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 C2CD4AQ8NCU7 369 aaPredicted RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 ACTRT2Q8TDY3 377 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PRPF18Q99633 342 aaKnown RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CINPQ9BW66 212 aaPredicted RBP13.01□□□□□ -0.33
CPNE1-201ENST00000317677 EMILIN2Q9BXX0 1053 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PRKD2Q9BZL6 878 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 C20orf27Q9GZN8 174 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 RHOJQ9H4E5 214 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PARVBQ9HBI1 364 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 LHX3Q9UBR4 397 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 PSMD13Q9UNM6 376 aa13.01□□□□□ -0.33
CPNE1-201ENST00000317677 CCL26Q9Y258 94 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms