RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 GK3PQ14409 553 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 USP41Q3LFD5 358 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 KANK2Q63ZY3 851 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 SCIMPQ6UWF3 145 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 CARNMT1Q8N4J0 409 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 DCBLD1Q8N8Z6 715 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 DLG3Q92796 817 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 FUBP1Q96AE4 644 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 CLSTN3Q9BQT9 956 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 TMEM175Q9BSA9 504 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 TRPM5Q9NZQ8 1165 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 SUCOQ9UBS9 1254 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 RIMKLBQ9ULI2 386 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 ANKRD36A6QL64 1941 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 A0A1B0GVM2 712 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 FGF4P08620 206 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 HGFP14210 728 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 YBX1P67809 324 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 MTA1Q13330 715 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 PXYLP1Q8TE99 480 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 EEF1AKMT1Q8WVE0 214 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 BTBD9Q96Q07 612 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 POLG2Q9UHN1 485 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 SARDHQ9UL12 918 aa18.25■□□□□ 0.51
SHKBP1-201ENST00000291842 LCHNA4D1U4 455 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 CRCPO75575 148 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 PRAMEF12O95522 483 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 TAS2R42Q7RTR8 314 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 PHYKPLQ8IUZ5 450 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 LRRC43Q8N309 656 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 PDZD8Q8NEN9 1154 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 PLD4Q96BZ4 506 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 TRIM8Q9BZR9 551 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 UBAP1Q9NZ09 502 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 FCF1Q9Y324 198 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 ARIH1Q9Y4X5 557 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 ASB1Q9Y576 335 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 STX7O15400 261 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 CHRM3P20309 590 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 GRIA2P42262 883 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 LCP2Q13094 533 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 CTSL3PQ5NE16 218 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 C6orf52Q5T4I8 152 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 ATXN7L2Q5T6C5 722 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 UGT3A1Q6NUS8 523 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 UGT2A3Q6UWM9 527 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 APLFQ8IW19 511 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 TMEM102Q8N9M5 508 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 LRTOMTQ8WZ04 291 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 CNBD2Q96M20 576 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 ASB2Q96Q27 587 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 CREBZFQ9NS37 354 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 MRGBPQ9NV56 204 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 TMEM181Q9P2C4 612 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 MAP10Q9P2G4 905 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 CD300AQ9UGN4 299 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 AP4S1Q9Y587 144 aa18.24■□□□□ 0.51
SHKBP1-201ENST00000291842 C15orf38-AP3S2A0A0A6YYH1 394 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 H0Y626 953 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 HOXA2O43364 376 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 TBL1XO60907 577 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 PKMP14618 531 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CTPS1P17812 591 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CAPN3P20807 821 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 PSMD8P48556 350 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 ATN1P54259 1190 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 DIO3P55073 304 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CAPRIN1Q14444 709 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 ANKS6Q68DC2 871 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 ARPINQ7Z6K5 226 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 TMCO2Q7Z6W1 182 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 ST13P4Q8IZP2 240 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 OR6K2Q8NGY2 324 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CAPNS2Q96L46 248 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 SLC22A12Q96S37 553 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 ADGRE3Q9BY15 652 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 TBC1D30Q9Y2I9 924 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 PCDHB9Q9Y5E1 797 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 AP4B1Q9Y6B7 739 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 ACADVLP49748 655 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CHN2P52757 468 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CDKL1Q00532 357 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 RPS6KA2Q15349 733 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 NRF1Q16656 503 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 C6orf10Q5SRN2 563 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 THEMIS2Q5TEJ8 643 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 TICAM1Q8IUC6 712 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CPNE9Q8IYJ1 553 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 FAM110BQ8TC76 370 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 CCDC97Q96F63 343 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 LINGO1Q96FE5 620 aa18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 KLF16Q9BXK1 252 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 SPATS2LQ9NUQ6 558 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 TRMT6Q9UJA5 497 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 OAS3Q9Y6K5 1087 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-201ENST00000291842 VPS26AO75436 327 aa18.22■□□□□ 0.51
SHKBP1-201ENST00000291842 TSPAN12O95859 305 aa18.22■□□□□ 0.51
SHKBP1-201ENST00000291842 HK3P52790 923 aa18.22■□□□□ 0.51
SHKBP1-201ENST00000291842 KLHDC10Q6PID8 442 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms