RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NAGSQ8N159 534 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 LPCAT1Q8NF37 534 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 PATE1Q8WXA2 126 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 WBP1Q96G27 269 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 COX14Q96I36 57 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 CCDC42Q96M95 316 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 WDR24Q96S15 920 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 CMKLR1Q99788 373 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 SEMA6CQ9H3T2 930 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 NHEJ1Q9H9Q4 299 aaPredicted RBP9.67□□□□□ -0.86
VPS41-201ENST00000265745 RDH14Q9HBH5 336 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 PCDH9Q9HC56 1237 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 ACSL6Q9UKU0 697 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 DNPEPQ9ULA0 475 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 CNOT6Q9ULM6 557 aaKnown RBP9.67□□□□□ -0.86
VPS41-201ENST00000265745 PLEKHM1Q9Y4G2 1056 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 LOXL2Q9Y4K0 774 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 RP1P56715 2156 aa9.67□□□□□ -0.86
VPS41-201ENST00000265745 AHCTF1Q8WYP5 2266 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 MGAQ8IWI9 3026 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 ANKRD66B4E2M5 251 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 K7ENP7 123 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 ERVH48-1M5A8F1 160 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 PPM1DO15297 605 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 EFSO43281 561 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 MFAP3LO75121 409 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 CPNE6O95741 557 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 JMJD7P0C870 316 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 ACTR1BP42025 376 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 CD86P42081 329 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 SPINT3P49223 89 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 ACTR1AP61163 376 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 C19orf57Q0VDD7 668 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 ZBTB17Q13105 803 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 SQSTM1Q13501 440 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 LRP8Q14114 963 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 TCEAL1Q15170 157 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 CLPPQ16740 277 aaPredicted RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 AMZ1Q400G9 498 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 INO80CQ6PI98 192 aaPredicted RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 ZNF574Q6ZN55 896 aaPredicted RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 MARK2Q7KZI7 788 aaKnown RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 TRIM74Q86UV6 250 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 PIM3Q86V86 326 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 RHOT2Q8IXI1 618 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 EID2BQ96D98 161 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 ZNF830Q96NB3 372 aaPredicted RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 OR2M4Q96R27 311 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 MLPHQ9BV36 600 aaPredicted RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 MAK16Q9BXY0 300 aaKnown RBP9.66□□□□□ -0.86
VPS41-201ENST00000265745 ADGRE3Q9BY15 652 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 CDH19Q9H159 772 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 FAM83DQ9H4H8 585 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 SPTLC3Q9NUV7 552 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 PISDQ9UG56 409 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 HEY1Q9Y5J3 304 aa9.66□□□□□ -0.86
VPS41-201ENST00000265745 TP53BP1Q12888 1972 aaPredicted RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 C1orf232A0A0U1RR37 186 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 RGSL1A5PLK6 1076 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 APOL1O14791 398 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 INPP4BO15327 924 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 ZW10O43264 779 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 DNAJC6O75061 913 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 ATP1A1P05023 1023 aaKnown RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 TPM1P09493 284 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 ITIH1P19827 911 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 SLC1A1P43005 524 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 AP1B1Q10567 949 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 PDK1Q15118 436 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 FAM182AQ5T1J6 154 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 PHF19Q5T6S3 580 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 HENMT1Q5T8I9 393 aaKnown RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 THSD4Q6ZMP0 1018 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 CCDC81Q6ZN84 652 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 JAMLQ86YT9 394 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 GALNT13Q8IUC8 556 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 CCHCR1Q8TD31 782 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 TTC9Q92623 222 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 TADA1Q96BN2 335 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 IMP4Q96G21 291 aaKnown RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 OLFM3Q96PB7 478 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 TRIB3Q96RU7 358 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 CCNL2Q96S94 520 aaPredicted RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 NUDT22Q9BRQ3 303 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 B3GNT4Q9C0J1 378 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 BRD8Q9H0E9 1235 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 VPS18Q9P253 973 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 ZNHIT2Q9UHR6 403 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 INTUQ9ULD6 942 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 PCYT1BQ9Y5K3 369 aaPredicted RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 OAS3Q9Y6K5 1087 aaKnown RBP9.65□□□□□ -0.86
VPS41-201ENST00000265745 BPTFQ12830 3046 aa9.65□□□□□ -0.86
VPS41-201ENST00000265745 IGHV1OR21-1A0A087WYE8 117 aa9.64□□□□□ -0.87
VPS41-201ENST00000265745 PRAMEF33A0A0G2JMD5 474 aa9.64□□□□□ -0.87
VPS41-201ENST00000265745 IGHV5-10-1A0A0J9YXX1 117 aa9.64□□□□□ -0.87
VPS41-201ENST00000265745 FADS2P1A8MWK0 482 aa9.64□□□□□ -0.87
VPS41-201ENST00000265745 C9orf172C9J069 976 aa9.64□□□□□ -0.87
VPS41-201ENST00000265745 AGRPO00253 132 aa9.64□□□□□ -0.87
VPS41-201ENST00000265745 HGSO14964 777 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms