RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CDK9P50750 372 aaKnown RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 TRAF2Q12933 501 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 PPP4R4Q6NUP7 873 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 LIMS2Q7Z4I7 341 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 ERI1Q8IV48 349 aaKnown RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 BHMTQ93088 406 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 GPR21Q99679 349 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 SEPT5Q99719 369 aaPredicted RBP12.59□□□□□ -0.39
LIG1-201ENST00000263274 TRMOQ9BU70 441 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 KATNAL1Q9BW62 490 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 SLC2A11Q9BYW1 496 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 TIMMDC1Q9NPL8 285 aa12.59□□□□□ -0.39
LIG1-201ENST00000263274 IQCA1LA6NCM1 817 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 SLC7A4O43246 635 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 LDLRP01130 860 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 CD1DP15813 335 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 KLHL35Q6PF15 583 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 NCCRP1Q6ZVX7 275 aaPredicted RBP12.58□□□□□ -0.39
LIG1-201ENST00000263274 SAPCD2Q86UD0 394 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 OR4K2Q8NGD2 314 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 IGSF8Q969P0 613 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 IMP4Q96G21 291 aaKnown RBP12.58□□□□□ -0.39
LIG1-201ENST00000263274 UBXN10Q96LJ8 280 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 TRIM62Q9BVG3 475 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 CCM2LQ9NUG4 571 aaPredicted RBP12.58□□□□□ -0.39
LIG1-201ENST00000263274 ZMYM5Q9UJ78 669 aa12.58□□□□□ -0.39
LIG1-201ENST00000263274 SLC6A2P23975 617 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 ATP1A4Q13733 1029 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 SEMA3AQ14563 771 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 PAGE3Q5JUK9 113 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 FBXL22Q6P050 247 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 ZNF549Q6P9A3 640 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 ZNF467Q7Z7K2 595 aaPredicted RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 GTF3C2Q8WUA4 911 aaPredicted RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 RSPH1Q8WYR4 309 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 FBXO32Q969P5 355 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 TEX37Q96LM6 180 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 CCDC138Q96M89 665 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 HOPXQ9BPY8 73 aaPredicted RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 TBCDQ9BTW9 1192 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 NAA50Q9GZZ1 169 aaKnown RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 MRGBPQ9NV56 204 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 INTS7Q9NVH2 962 aaKnown RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 ANAPC2Q9UJX6 822 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 GSTA4O15217 222 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 GUCA1CO95843 209 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 CDKN1CP49918 316 aaPredicted RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 NUP107P57740 925 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 MTPNP58546 118 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 RAD51Q06609 339 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 BNIP3Q12983 259 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 PTPRRQ15256 657 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 ANKDD1AQ495B1 522 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 NHSL2Q5HYW2 709 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 TAF2Q6P1X5 1199 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 CYHR1Q6ZMK1 362 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 FBXO30Q8TB52 745 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 STAG3L4Q8TBR4 150 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 TFAP2CQ92754 450 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 ROPN1LQ96C74 230 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 ISOC1Q96CN7 298 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 CENPNQ96H22 339 aaPredicted RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 MUC3BQ9H195 1237 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 NOL6Q9H6R4 1146 aaKnown RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 TAS2R13Q9NYV9 303 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 CIDEBQ9UHD4 219 aa12.58□□□□□ -0.4
LIG1-201ENST00000263274 MAGED1Q9Y5V3 778 aaPredicted RBP12.58□□□□□ -0.4
LIG1-201ENST00000263274 OR4F21O95013 312 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 NRG1Q02297 640 aaPredicted RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 IHHQ14623 411 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 LDLRAP1Q5SW96 308 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 GDF6Q6KF10 455 aaPredicted RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 KCTD8Q6ZWB6 473 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 TTC9BQ8N6N2 239 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 BPIFB6Q8NFQ5 453 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 OR7D4Q8NG98 312 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 GIPC3Q8TF64 312 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 FIG4Q92562 907 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 PPP1R2P1Q96PQ5 205 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 MFSD1Q9H3U5 465 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 PRRC2BQ5JSZ5 2229 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 GPR182O15218 404 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 PARNO95453 639 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 SERPINF2P08697 491 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 ZNF37AP17032 561 aaPredicted RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 RPL9P32969 192 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 PHEXP78562 749 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 MAP2K5Q13163 448 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 PMS2P3Q13401 168 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 MAPRE1Q15691 268 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 MS4A13Q5J8X5 152 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 SLC2A7Q6PXP3 512 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 PARP8Q8N3A8 854 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 LPCAT1Q8NF37 534 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 NSMCE2Q96MF7 247 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 THUMPD3Q9BV44 507 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 POLR1EQ9GZS1 481 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 SMOC2Q9H3U7 446 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 TUBB1Q9H4B7 451 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 CSNK1G1Q9HCP0 422 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms