RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TMEM86AQ8N2M4 240 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 C12orf43Q96C57 262 aaKnown RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 FAR2Q96K12 515 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ADI1Q9BV57 179 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SP110Q9HB58 689 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 POLR3BQ9NW08 1133 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 IKZF3Q9UKT9 509 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SARDHQ9UL12 918 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 A0A1W2PQ45 241 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 A0A1W2PQY0 241 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SUPT3HB4E1H0 165 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 FXYD1O00168 92 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 EIF3FO00303 357 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 GPR182O15218 404 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 CRCPO75575 148 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 GOT2P00505 430 aaKnown RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 CHRNA1P02708 482 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ALDH3B2P48448 385 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 AGTR2P50052 363 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PSMD7P51665 324 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 POLD3Q15054 466 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 UPP1Q16831 310 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 AAK1Q2M2I8 961 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 TRIM71Q2Q1W2 868 aaKnown RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 ARTNQ5T4W7 220 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PPP4R4Q6NUP7 873 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 RALGPS2Q86X27 583 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 CLYBLQ8N0X4 340 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 RTL3Q8N8U3 475 aaKnown RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 PCYOX1LQ8NBM8 494 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 CLIP3Q96DZ5 547 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SLC25A51Q9H1U9 297 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 CSNK1G1Q9HCP0 422 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PAK6Q9NQU5 681 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 TBC1D13Q9NVG8 400 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 CNOT11Q9UKZ1 510 aaKnown RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 NDUFAF1Q9Y375 327 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 TMED5Q9Y3A6 229 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 MAGED1Q9Y5V3 778 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 AZIN1O14977 448 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ARPC2O15144 300 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ATE1O95260 518 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PEX11BO96011 259 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 MMP2P08253 660 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PCNAP12004 261 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 CD1DP15813 335 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SLC6A2P23975 617 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 DNAJB2P25686 324 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 HOXD11P31277 338 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 THPOP40225 353 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SH3BGRP55822 239 aaPredicted RBP10.01□□□□□ -0.81
LIG3-201ENST00000262327 HERVK_113P63132 956 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 EFEMP1Q12805 493 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PTPRRQ15256 657 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PAGE3Q5JUK9 113 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 GRAMD4Q6IC98 578 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 OVOS1Q6IE37 1185 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 FAM45BPQ6NSW5 357 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SLC22A9Q8IVM8 553 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 MIER2Q8N344 545 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 PGBD5Q8N414 524 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 FAM45AQ8TCE6 357 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ISOC1Q96CN7 298 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 CCDC126Q96EE4 140 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 TSPAN17Q96FV3 270 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 EXOC2Q96KP1 924 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ERVK-6Q9BXR3 956 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 ANKRD60Q9BZ19 345 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 TRPV5Q9NQA5 729 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 STARD7Q9NQZ5 370 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 SLC38A7Q9NVC3 462 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 POLG2Q9UHN1 485 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 NOD1Q9Y239 953 aa10.01□□□□□ -0.81
LIG3-201ENST00000262327 FRMPD3Q5JV73 1810 aa10□□□□□ -0.81
LIG3-201ENST00000262327 CCDC162PA2VCL2 907 aa10□□□□□ -0.81
LIG3-201ENST00000262327 ARVCFO00192 962 aa10□□□□□ -0.81
LIG3-201ENST00000262327 CLASP2O75122 1294 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 SLC2A3P11169 496 aa10□□□□□ -0.81
LIG3-201ENST00000262327 CD247P20963 164 aa10□□□□□ -0.81
LIG3-201ENST00000262327 NFKBIAP25963 317 aa10□□□□□ -0.81
LIG3-201ENST00000262327 EEF1DP29692 281 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 FMO4P31512 558 aa10□□□□□ -0.81
LIG3-201ENST00000262327 ACVRL1P37023 503 aa10□□□□□ -0.81
LIG3-201ENST00000262327 PSMD8P48556 350 aa10□□□□□ -0.81
LIG3-201ENST00000262327 TIAL1Q01085 375 aaKnown RBP eCLIP10□□□□□ -0.81
LIG3-201ENST00000262327 MERTKQ12866 999 aa10□□□□□ -0.81
LIG3-201ENST00000262327 PMS2P3Q13401 168 aa10□□□□□ -0.81
LIG3-201ENST00000262327 NFYCQ13952 458 aa10□□□□□ -0.81
LIG3-201ENST00000262327 MANEALQ5VSG8 457 aa10□□□□□ -0.81
LIG3-201ENST00000262327 RAP1GAP2Q684P5 730 aa10□□□□□ -0.81
LIG3-201ENST00000262327 THOC7Q6I9Y2 204 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 XKR5Q6UX68 686 aa10□□□□□ -0.81
LIG3-201ENST00000262327 TMEM26Q6ZUK4 368 aa10□□□□□ -0.81
LIG3-201ENST00000262327 IQCF2Q8IXL9 164 aa10□□□□□ -0.81
LIG3-201ENST00000262327 CALML6Q8TD86 181 aa10□□□□□ -0.81
LIG3-201ENST00000262327 RSPH1Q8WYR4 309 aa10□□□□□ -0.81
LIG3-201ENST00000262327 LRRC58Q96CX6 371 aa10□□□□□ -0.81
LIG3-201ENST00000262327 MYEOVQ96EZ4 313 aa10□□□□□ -0.81
LIG3-201ENST00000262327 VPS50Q96JG6 964 aa10□□□□□ -0.81
LIG3-201ENST00000262327 CDK15Q96Q40 435 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms