RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 MUC13Q9H3R2 512 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 MRTO4Q9UKD2 239 aaKnown RBP18.89■□□□□ 0.61
PTPRE-201ENST00000254667 AFDNP55196 1824 aaKnown RBP18.89■□□□□ 0.61
PTPRE-201ENST00000254667 H3BNH8 94 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 NFKBIEO00221 500 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 PSMD8P48556 350 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 ACLYP53396 1101 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 IFNL1Q8IU54 200 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 ZNF384Q8TF68 577 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 OSBPL11Q9BXB4 747 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 SIX2Q9NPC8 291 aa18.89■□□□□ 0.61
PTPRE-201ENST00000254667 SAMHD1Q9Y3Z3 626 aaKnown RBP18.89■□□□□ 0.61
PTPRE-201ENST00000254667 HMGB3O15347 200 aaKnown RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 TRBC1P01850 177 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 OGNP20774 298 aaKnown RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 MANFP55145 182 aaKnown RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 CAP1Q01518 475 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 ZNF618Q5T7W0 954 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 ZNF697Q5TEC3 545 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 C11orf88Q6PI97 169 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 FAM124AQ86V42 546 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 DBF4BQ8NFT6 615 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 S100A13Q99584 98 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 LMAN2LQ9H0V9 348 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 KLRG2A4D1S0 409 aaPredicted RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 HLA-DQA2P01906 255 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 SLC7A2P52569 658 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 USP46P62068 366 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 SEMA5AQ13591 1074 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 MZT2AQ6P582 158 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 CPSF7Q8N684 471 aaKnown RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 OR7D4Q8NG98 312 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 NXNL1Q96CM4 212 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 MPP4Q96JB8 637 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 SLC7A4O43246 635 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 CD48P09326 243 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 LMO2P25791 158 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 PSRC1Q6PGN9 363 aaPredicted RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 ECHDC2Q86YB7 292 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 ST13P5Q8NFI4 369 aaPredicted RBP18.88■□□□□ 0.61
PTPRE-201ENST00000254667 OR2T12Q8NG77 320 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 AGAP11Q8TF27 550 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 MYOCQ99972 504 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 RACGAP1Q9H0H5 632 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 SLC25A12O75746 678 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 CLDN9O95484 217 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 ESR1P03372 595 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 MPSTP25325 297 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 SPIRE1Q08AE8 756 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 BRSK1Q8TDC3 778 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 TRPS1Q9UHF7 1281 aa18.88■□□□□ 0.61
PTPRE-201ENST00000254667 LRATO95237 230 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 VNN1O95497 513 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 DPYSL2Q16555 572 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TBC1D21Q8IYX1 336 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 RIPOR3Q96MK2 946 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TRMT13Q9NUP7 481 aaKnown RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 SATB2Q9UPW6 733 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TSC22D4Q9Y3Q8 395 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 ITPKAP23677 461 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 PTDSS1P48651 473 aaKnown RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 KCNJ2P63252 427 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 SPIBQ01892 262 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 ATP13A5Q4VNC0 1218 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 SNRNP27Q8WVK2 155 aaKnown RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 BRI3BPQ8WY22 251 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 SPOCK2Q92563 424 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TCF25Q9BQ70 676 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 C11orf84Q9BUA3 381 aaPredicted RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 GPR88Q9GZN0 384 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 GTPBP1O00178 669 aaKnown RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 KLF10Q13118 480 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TOMM20Q15388 145 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 PYROXD2Q8N2H3 581 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 CLIP3Q96DZ5 547 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 DCUN1D5Q9BTE7 237 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 HMG20AQ9NP66 347 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 CCNB1IP1Q9NPC3 277 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 SLC28A2O43868 658 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 RNASEH2AO75792 299 aaKnown RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 PTGER3P43115 390 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 KIR3DL1P43629 444 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 ERVK-21P61565 698 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 LCP2Q13094 533 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 NR1D2Q14995 579 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 DLG2Q15700 870 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 LINGO4Q6UY18 593 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 ANKS1BQ7Z6G8 1248 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 GALNT13Q8IUC8 556 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 KREMEN2Q8NCW0 462 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 KLHL25Q9H0H3 589 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TLR6Q9Y2C9 796 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 PRR5-ARHGAP8B1AHC4 643 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 OR10H3O60404 316 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 ARHGAP8P85298 464 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 NAIF1Q69YI7 327 aaPredicted RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 TMPRSS11BQ86T26 416 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 MPP5Q8N3R9 675 aa18.87■□□□□ 0.61
PTPRE-201ENST00000254667 ARL14EPQ8N8R7 260 aaPredicted RBP18.87■□□□□ 0.61
PTPRE-201ENST00000254667 BPIFB6Q8NFQ5 453 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms