RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 BMP2P12643 396 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PTGIRP43119 386 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CABP4P57796 275 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TNK2Q07912 1038 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 HNRNPDQ14103 355 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SMAD2Q15796 467 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PTPN20Q4JDL3 420 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CYP2U1Q7Z449 544 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RFX6Q8HWS3 928 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CBWD2Q8IUF1 395 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 UNC5BQ8IZJ1 945 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AURKBQ96GD4 344 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OSBPL6Q9BZF3 934 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM168Q9H0V1 697 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FAM96AQ9H5X1 160 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CYP3A43Q9HB55 503 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 XPNPEP3Q9NQH7 507 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GPR55Q9Y2T6 319 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RPAP1Q9BWH6 1393 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR10H3O60404 316 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LIPFP07098 398 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ZSCAN5DPP0CG00 497 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RPA2P15927 270 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ADCY7P51828 1080 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PDK2Q15119 407 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ARHGAP15Q53QZ3 475 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TAF2Q6P1X5 1199 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR5J2Q8NH18 312 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR6S1Q8NH40 331 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SEC14L1Q92503 715 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PTPRN2Q92932 1015 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PANX1Q96RD7 426 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TMED9Q9BVK6 235 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MVB12BQ9H7P6 319 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CBX8Q9HC52 389 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PDE7BQ9NP56 450 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NMRK2Q9NPI5 230 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 IL20Q9NYY1 176 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCDH11XQ9BZA7 1347 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCDH11YQ9BZA8 1340 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TRBV23-1A0A0A0MS06 115 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GMNCA6NCL1 334 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KLK10O43240 276 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 YWHAQP27348 245 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LCN1P31025 176 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ALDH5A1P51649 535 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TPI1P60174 286 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SULT2A1Q06520 285 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SNTA1Q13424 505 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MRPL58Q14197 206 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AAK1Q2M2I8 961 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AP5B1Q2VPB7 878 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 BRMS1LQ5PSV4 323 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NIPAL1Q6NVV3 410 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 B3GNT9Q6UX72 402 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SKA3Q8IX90 412 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC105Q8IYK2 499 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KLHL36Q8N4N3 616 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR2L3Q8NG85 312 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KCNK17Q96T54 332 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 EPB41L4BQ9H329 900 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MYNNQ9NPC7 610 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RBM12Q9NTZ6 932 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MYO18BQ8IUG5 2567 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 A0A0A6YYC8 382 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 C19orf67A6NJJ6 358 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 I3L1I5 382 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 AIM2O14862 343 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 JAK2O60674 1132 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CPNE3O75131 537 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CCNOP22674 350 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 UQCRC1P31930 480 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TIE1P35590 1138 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PGM1P36871 562 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CSKP41240 450 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PTDSS1P48651 473 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SESN2P58004 480 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DEFA5Q01523 94 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HMGCS1Q01581 520 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RFTN1Q14699 578 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CHRNA6Q15825 494 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SLC18A3Q16572 532 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MEA1Q16626 185 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CMPK2Q5EBM0 449 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GPR157Q5UAW9 335 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ARHGEF19Q8IW93 802 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 WDR48Q8TAF3 677 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TREX2Q9BQ50 279 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 LRRN3Q9H3W5 708 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NINJ2Q9NZG7 142 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 USP36Q9P275 1121 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CNOT11Q9UKZ1 510 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ACSL5Q9ULC5 683 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ADCY9O60503 1353 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KDRP35968 1356 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RHOP08100 348 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GSTM1P09488 218 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CRATP43155 626 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PSPHP78330 225 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms