RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 USP17L22D6RA61 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L17D6RBQ6 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L19D6RCP7 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L20D6RJB6 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TSTD3H0UI37 97 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 H3BN98 237 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 KPNA6O60684 536 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SNAP29O95721 258 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IFNGP01579 166 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SEPHS1P49903 392 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 WDR4P57081 412 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DCDC1P59894 354 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L24Q0WX57 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SEMA3AQ14563 771 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 C10orf62Q5T681 223 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ANKRD22Q5VYY1 191 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FBXO31Q5XUX0 539 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L6PQ6QN14 398 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PDZD9Q8IXQ8 264 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PCDH20Q8N6Y1 951 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ALG3Q92685 438 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 S100PBPQ96BU1 408 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 REXO5Q96IC2 774 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CTRCQ99895 268 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PTGFRNQ9P2B2 879 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DHX15O43143 795 aaKnown RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 PLA2G6O60733 806 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ERN1O75460 977 aaKnown RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SLC2A2P11168 524 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 CD36P16671 472 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 POLR2CP19387 275 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 GSTM3P21266 225 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 CYP2F1P24903 491 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 MTHFRP42898 656 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 IDH3AP50213 366 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 LIPEQ05469 1076 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 COL28A1Q2UY09 1125 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 MTERF2Q49AM1 385 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SYTL3Q4VX76 610 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 LYPLAL1Q5VWZ2 237 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 IRF2BP1Q8IU81 584 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 BTF3L4Q96K17 158 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ARPC5LQ9BPX5 153 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SAGE1Q9NXZ1 904 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 NFKBIL1Q9UBC1 381 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 TFR2Q9UP52 801 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 KANTRA0A1W2PQU2 76 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 DFFAO00273 331 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 RIMBP2O15034 1052 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 FABP3P05413 133 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 OR56A5P0C7T3 313 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 TYRP14679 529 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 FLI1Q01543 452 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 CRY1Q16526 586 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 DCAF4L1Q3SXM0 396 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 TIGD2Q4W5G0 525 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 IER5Q5VY09 327 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 NIPA2Q8N8Q9 360 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 DNAJB14Q8TBM8 379 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 TNFAIP8L1Q8WVP5 186 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 KCTD10Q9H3F6 313 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 MGAT4AQ9UM21 535 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 HSPB11Q9Y547 144 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ALG5Q9Y673 324 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 A0A0J9YYE9 177 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ELOVL7A1L3X0 281 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 CHRNB1P11230 501 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ENDOUP21128 410 aaKnown RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 EPHA3P29320 983 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SLC26A2P50443 739 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 FAPQ12884 760 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 FUT11Q495W5 492 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SLC27A3Q5K4L6 730 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 PIK3R6Q5UE93 754 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 REP15Q6BDI9 236 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 NKX2-3Q8TAU0 364 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 MYO19Q96H55 970 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 MRI1Q9BV20 369 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF416Q9BWM5 594 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 RAD18Q9NS91 495 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ZIM2Q9NZV7 527 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 LINC00854A0A1B0GVQ3 168 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 FAM234BA2RU67 622 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 AURKAO14965 403 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SCN2BO60939 215 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF182P17025 639 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 LCP2Q13094 533 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 FNBP1LQ5T0N5 605 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 NEPROQ6NW34 567 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 TREML1Q86YW5 311 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 CPXCR1Q8N123 301 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF655Q8N720 491 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 COLGALT1Q8NBJ5 622 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SLC38A4Q969I6 547 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 C11orf24Q96F05 449 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 LENG8Q96PV6 779 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 MXRA8Q9BRK3 442 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 UCKL1Q9NWZ5 548 aa4.65□□□□□ -1.66
SCN1A-220ENST00000641603 SAE1Q9UBE0 346 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-220ENST00000641603 RBMX2Q9Y388 322 aaKnown RBP4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms