RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TNFSF14O43557 240 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 STRNO43815 780 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CEP104O60308 925 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 HBP1O60381 514 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ZIC3O60481 467 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RGS11O94810 467 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 NDUFB4O95168 129 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CBX6O95503 412 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 LDHAP00338 332 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 URODP06132 367 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 MMP2P08253 660 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TNNT1P13805 278 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ITGA2P17301 1181 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PTPN2P17706 415 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TYMPP19971 482 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 MAOAP21397 527 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 HOXA13P31271 388 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 HNRNPH1P31943 449 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 SHMT1P34896 483 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PIGAP37287 484 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 EIF2S3P41091 472 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 SKIV2L2P42285 1042 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 HALP42357 657 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 MMP14P50281 582 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PAPOLAP51003 745 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 BLKP51451 505 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TERF1P54274 439 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ARL4CP56559 192 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SEC61BP60468 96 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 CHRNDQ07001 517 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PTP4A2Q12974 167 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 BRD3Q15059 726 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RNPS1Q15287 305 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 SOWAHAQ2M3V2 549 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 C2orf68Q2NKX9 166 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 EIF2S3LQ2VIR3 472 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 CTU2Q2VPK5 515 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 GRAMD1BQ3KR37 738 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ADCK5Q3MIX3 580 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RNF212Q495C1 297 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 GLIPR1L2Q4G1C9 344 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CTXN3Q4LDR2 81 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SOWAHCQ53LP3 525 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 RAB6CQ53S08 254 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 WDR38Q5JTN6 314 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 WDR45BQ5MNZ6 344 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 STXBP5Q5T5C0 1151 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TRNP1Q6NT89 227 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TMEM81Q6P7N7 255 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ZNF790Q6PG37 636 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 FBXO46Q6PJ61 603 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 DOK6Q6PKX4 331 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CYP26C1Q6V0L0 522 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CCNI2Q6ZMN8 369 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 KCTD8Q6ZWB6 473 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SHFQ7M4L6 423 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PRSS45Q7RTY3 260 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TRPT1Q86TN4 253 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 FAM160B2Q86V87 743 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ZC3HC1Q86WB0 502 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 CHD1LQ86WJ1 897 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TMEM219Q86XT9 240 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 KMT5CQ86Y97 462 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 C2CD5Q86YS7 1000 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 MYLK4Q86YV6 388 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 TICAM1Q8IUC6 712 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TMTC1Q8IUR5 882 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CCDC117Q8IWD4 279 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 ODF3L1Q8IXM7 274 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CCDC105Q8IYK2 499 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CPXM2Q8N436 756 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ZNF843Q8N446 348 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TMEM57Q8N5G2 664 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 STPG4Q8N801 248 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ZNF614Q8N883 585 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ENAHQ8N8S7 591 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 USP38Q8NB14 1042 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 GJC3Q8NFK1 279 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RASSF8Q8NHQ8 419 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 BBS10Q8TAM1 723 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 MAGEC3Q8TD91 643 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 GRHL3Q8TE85 626 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TBC1D22AQ8WUA7 517 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 AFG1LQ8WV93 481 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RUFY2Q8WXA3 655 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 HSPH1Q92598 858 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CNOT9Q92600 299 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 GOLGA1Q92805 767 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 TBC1D20Q96BZ9 403 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 GCC1Q96CN9 775 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 ZBTB10Q96DT7 871 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 CCDC136Q96JN2 1154 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SLC41A2Q96JW4 573 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 COG8Q96MW5 612 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 AGAP3Q96P47 875 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 RPS6KC1Q96S38 1066 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 EYA3Q99504 573 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 PYM1Q9BRP8 204 aaKnown RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 FUZQ9BT04 418 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 FGFBP2Q9BYJ0 223 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms