RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 RAD18Q9NS91 495 aa13.13□□□□□ -0.31
GTF3A-209ENST00000640289 BFARQ9NZS9 450 aa13.13□□□□□ -0.31
GTF3A-209ENST00000640289 NFKBIL1Q9UBC1 381 aaPredicted RBP13.13□□□□□ -0.31
GTF3A-209ENST00000640289 SLC2A6Q9UGQ3 507 aa13.13□□□□□ -0.31
GTF3A-209ENST00000640289 TCAF1Q9Y4C2 921 aa13.13□□□□□ -0.31
GTF3A-209ENST00000640289 SPAG17Q6Q759 2223 aa13.13□□□□□ -0.31
GTF3A-209ENST00000640289 LRRK1Q38SD2 2015 aa13.13□□□□□ -0.31
GTF3A-209ENST00000640289 GLYATL1P3A0A0U1RQE8 302 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 HEATR9A2RTY3 570 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TMEM202A6NGA9 273 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 MROH6A6NGR9 719 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 CACNB4O00305 520 aaPredicted RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TOR1BO14657 336 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TP73O15350 636 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A9O60656 530 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 MAGEC1O60732 1142 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PPFIA2O75334 1257 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 BANF1O75531 89 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 SYPP08247 313 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 MYCLP1P12525 358 aaPredicted RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 MLNP12872 115 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A6P19224 532 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A1P22309 533 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A4P22310 534 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ADRA1DP25100 572 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TEAD1P28347 426 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A3P35503 534 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A5P35504 534 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 NPY2RP49146 381 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ARSDP51689 593 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 KIAA1024LP59773 190 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 XIAPP98170 497 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PDE1BQ01064 536 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 EIF2B5Q13144 721 aaKnown RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PEX6Q13608 980 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 NFATC4Q14934 902 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TRADDQ15628 312 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 CHRNA6Q15825 494 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PCID2Q5JVF3 399 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TSTD2Q5T7W7 516 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 DUPD1Q68J44 220 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ENPP7Q6UWV6 458 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ADAMTSL4Q6UY14 1074 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ALYREFQ86V81 257 aaKnown RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 HOOK3Q86VS8 718 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 KIAA2013Q8IYS2 634 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 AGGF1Q8N302 714 aaeCLIP13.12□□□□□ -0.317e-8■■□□□ 11.5
GTF3A-209ENST00000640289 MINDY1Q8N5J2 469 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 LRRN4CLQ8ND94 238 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PPHLN1Q8NEY8 458 aaKnown RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PTCD2Q8WV60 388 aaKnown RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ZSCAN5AQ9BUG6 496 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TEX101Q9BY14 249 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 IL22Q9GZX6 179 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 CDH19Q9H159 772 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 SUDS3Q9H7L9 328 aaPredicted RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A7Q9HAW7 530 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A10Q9HAW8 530 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 UGT1A8Q9HAW9 530 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 ARFGAP3Q9NP61 516 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 NLE1Q9NVX2 485 aaPredicted RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 TMPRSS11EQ9UL52 423 aa13.12□□□□□ -0.31
GTF3A-209ENST00000640289 CNOT6Q9ULM6 557 aaKnown RBP13.12□□□□□ -0.31
GTF3A-209ENST00000640289 PCDH15Q96QU1 1955 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 OR51F1A6NGY5 319 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 AP3B1O00203 1094 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 CDX4O14627 284 aaPredicted RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 SCAMP1O15126 338 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 PRAMEF1O95521 474 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 PYGLP06737 847 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 NMBRP28336 390 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 MAGEA3P43357 314 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 POLD2P49005 469 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ATXN3P54252 364 aaPredicted RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 IL9RQ01113 521 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 PTK2BQ14289 1009 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 MORF4L2Q15014 288 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ZNF423Q2M1K9 1284 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ATP13A5Q4VNC0 1218 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 FNBP1LQ5T0N5 605 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ZNF648Q5T619 568 aaPredicted RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ZDHHC20Q5W0Z9 365 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 DOK6Q6PKX4 331 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 CES3Q6UWW8 571 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 MACC1Q6ZN28 852 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 PARGQ86W56 976 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 DCP2Q8IU60 420 aaKnown RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 OR13J1Q8NGT2 312 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 STYXQ8WUJ0 223 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 COX14Q96I36 57 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 HIC2Q96JB3 615 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 TBATAQ96M53 351 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 WDR92Q96MX6 357 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ELF4Q99607 663 aaPredicted RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 TRIM56Q9BRZ2 755 aaKnown RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 ZDHHC5Q9C0B5 715 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 TCEAL2Q9H3H9 227 aaPredicted RBP13.11□□□□□ -0.31
GTF3A-209ENST00000640289 FAM96AQ9H5X1 160 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 L2HGDHQ9H9P8 463 aa13.11□□□□□ -0.31
GTF3A-209ENST00000640289 XAB2Q9HCS7 855 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms