RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GCNT3O95395 438 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CLIC3O95833 236 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 IFNA4P05014 189 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 CHRNB2P17787 502 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RAB3BP20337 219 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GRAPQ13588 217 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PRR5LQ6MZQ0 368 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 FAM45BPQ6NSW5 357 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 POLNQ7Z5Q5 900 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 DPP9Q86TI2 863 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RCOR2Q8IZ40 523 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 LILRA2Q8N149 483 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GDPD1Q8N9F7 314 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TP53I13Q8NBR0 393 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SLC7A6Q92536 515 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 TRNT1Q96Q11 434 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GMLQ99445 158 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ZCCHC2Q9C0B9 1178 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 XKR8Q9H6D3 395 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 ARNT2Q9HBZ2 717 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 EXOSC4Q9NPD3 245 aaKnown RBP5.73□□□□□ -1.49
SCN1A-216ENST00000637968 SCUBE2Q9NQ36 999 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 GPRC5BQ9NZH0 403 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 MED16Q9Y2X0 877 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 RIPK3Q9Y572 518 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 PCDHGB6Q9Y5F9 930 aa5.73□□□□□ -1.49
SCN1A-216ENST00000637968 KIF20BQ96Q89 1820 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 MYMKA6NI61 221 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SLCO1B7G3V0H7 640 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TRIM77I1YAP6 450 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 EI24O14681 340 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ORC5O43913 435 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 AIREO43918 545 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GRIN3BO60391 1043 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 LYPLA1O75608 230 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM13AO94988 1023 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 DHFRP00374 187 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CYP3A4P08684 503 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FOSL2P15408 326 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TSPAN7P41732 249 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 BPIFB3P59826 476 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PSMC6P62333 389 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 POU5F1BQ06416 359 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TNK2Q07912 1038 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TRIM28Q13263 835 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GRK1Q15835 563 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SULF1Q8IWU6 871 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SPAG16Q8N0X2 631 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 EMC1Q8N766 993 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 MFSD2AQ8NA29 543 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 OR7D4Q8NG98 312 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SLC13A3Q8WWT9 602 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 RAD54LQ92698 747 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 YIPF5Q969M3 257 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 C10orf90Q96M02 699 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF251Q9BRH9 671 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF577Q9BSK1 485 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CCNB1IP1Q9NPC3 277 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 KLHL1Q9NR64 748 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SMYD2Q9NRG4 433 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CMTM6Q9NX76 183 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 DTLQ9NZJ0 730 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ABCD2Q9UBJ2 740 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 A0A1B0GVM2 712 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 RHPN2P1A8MT19 583 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 RTCAO00442 366 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 XYLBO75191 536 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 H2AFYO75367 372 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TRIM3O75382 744 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PPM1BO75688 479 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 KDM4BO94953 1096 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CCNB2O95067 398 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 XPAP23025 273 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GCAP28676 217 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ARFIP1P53367 373 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GAD2Q05329 585 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GRM7Q14831 915 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GRIK4Q16099 956 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CYP51A1Q16850 503 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 INTS11Q5TA45 600 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 INTS5Q6P9B9 1019 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 NAPRTQ6XQN6 538 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF574Q6ZN55 896 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ZBTB33Q86T24 672 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GPALPP1Q8IXQ4 340 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM178BQ8IXR5 827 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CCDC24Q8N4L8 307 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CNTD1Q8N815 330 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 YIPF7Q8N8F6 280 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TMEM102Q8N9M5 508 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM156AQ8NDB6 213 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 IL17RDQ8NFM7 739 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 LNX1Q8TBB1 728 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FATE1Q969F0 183 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 HS6ST2Q96MM7 605 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 QRSL1Q9H0R6 528 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 MRPL47Q9HD33 250 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ACP6Q9NPH0 428 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PNPOQ9NVS9 261 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 MED11Q9P086 117 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms