RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 ZNF564Q8TBZ8 553 aaPredicted RBP18.37■□□□□ 0.53
CLN6-220ENST00000637450 COX14Q96I36 57 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 OR2M4Q96R27 311 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 ZNF670Q9BS34 389 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 TDRD1Q9BXT4 1180 aaKnown RBP18.37■□□□□ 0.53
CLN6-220ENST00000637450 NENFQ9UMX5 172 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 CHKBQ9Y259 395 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 ASH1LQ9NR48 2969 aaKnown RBP18.36■□□□□ 0.53
CLN6-220ENST00000637450 J3QKU1 62 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 MAP3K6O95382 1288 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 LIMK2P53671 638 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 TRA2AQ13595 282 aaKnown RBP eCLIP18.36■□□□□ 0.53
CLN6-220ENST00000637450 MANEAQ5SRI9 462 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 TMEM164Q5U3C3 297 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 NKAIN2Q5VXU1 208 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 TENM4Q6N022 2769 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 TRIM74Q86UV6 250 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 MAP7D3Q8IWC1 876 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.36■□□□□ 0.53
CLN6-220ENST00000637450 EXD3Q8N9H8 876 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 RCBTB1Q8NDN9 531 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 EXD1Q8NHP7 514 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 FAF2Q96CS3 445 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 RIOK2Q9BVS4 552 aaKnown RBP18.36■□□□□ 0.53
CLN6-220ENST00000637450 DNPEPQ9ULA0 475 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 PCDHB11Q9Y5F2 797 aa18.36■□□□□ 0.53
CLN6-220ENST00000637450 IGHV1OR21-1A0A087WYE8 117 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 SYCE3A1L190 88 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.35■□□□□ 0.53
CLN6-220ENST00000637450 PROSCO94903 275 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 CLDN7O95471 211 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 GYPCP04921 128 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 GJC1P36383 396 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 TAS2R40P59535 323 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 RPL26P61254 145 aaKnown RBP18.35■□□□□ 0.53
CLN6-220ENST00000637450 NIPAL4Q0D2K0 466 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 XKR5Q6UX68 686 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 MARK2Q7KZI7 788 aaKnown RBP18.35■□□□□ 0.53
CLN6-220ENST00000637450 PQLC3Q8N755 202 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 OR4D9Q8NGE8 314 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 LRRN4Q8WUT4 740 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 CCDC74BQ96LY2 380 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 LYSMD1Q96S90 227 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 HAUS2Q9NVX0 235 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 CTTNBP2NLQ9P2B4 639 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 RPL26L1Q9UNX3 145 aaKnown RBP18.35■□□□□ 0.53
CLN6-220ENST00000637450 TTLL3Q9Y4R7 772 aa18.35■□□□□ 0.53
CLN6-220ENST00000637450 SCN8AQ9UQD0 1980 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 BSNQ9UPA5 3926 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 ITGB2P05107 769 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 HLA-DQB2P05538 268 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 FGF3P11487 239 aaPredicted RBP18.34■□□□□ 0.53
CLN6-220ENST00000637450 MX2P20592 715 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 CA4P22748 312 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 GBE1Q04446 702 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 SLC10A2Q12908 348 aaPredicted RBP18.34■□□□□ 0.53
CLN6-220ENST00000637450 LRP8Q14114 963 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 VASH2Q86V25 355 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 GALNT13Q8IUC8 556 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 TAAR9Q96RI9 348 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 WDR24Q96S15 920 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 DPYSL5Q9BPU6 564 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 PCDH9Q9HC56 1237 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 KCNK4Q9NYG8 393 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 UVRAGQ9P2Y5 699 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 CNOT6Q9ULM6 557 aaKnown RBP18.34■□□□□ 0.53
CLN6-220ENST00000637450 PCDHGA3Q9Y5H0 932 aa18.34■□□□□ 0.53
CLN6-220ENST00000637450 BOD1L1Q8NFC6 3051 aa18.33■□□□□ 0.53
CLN6-220ENST00000637450 TRBV23OR9-2A0A075B6M9 112 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 INPP4BO15327 924 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 DNAJC6O75061 913 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 KRT7P08729 469 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 H2AFZP0C0S5 128 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 WT1P19544 449 aaPredicted RBP18.33■□□□□ 0.52
CLN6-220ENST00000637450 HNRNPH3P31942 346 aaKnown RBP18.33■□□□□ 0.52
CLN6-220ENST00000637450 CASP14P31944 242 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 FASLGP48023 281 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 ARSDP51689 593 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 GPLD1P80108 840 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 H2AFVQ71UI9 128 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 SFRP1Q8N474 314 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 AGBL5Q8NDL9 886 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 LPCAT1Q8NF37 534 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 EXTL1Q92935 676 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 DTLQ9NZJ0 730 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 VPS18Q9P253 973 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 ZNHIT2Q9UHR6 403 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 LCMT1Q9UIC8 334 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 PCDHGA4Q9Y5G9 962 aa18.33■□□□□ 0.52
CLN6-220ENST00000637450 PCYT1BQ9Y5K3 369 aaPredicted RBP18.33■□□□□ 0.52
CLN6-220ENST00000637450 STMND1H3BQB6 276 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 ASMTLO95671 621 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 MMP2P08253 660 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 THRAP10827 490 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 MPSTP25325 297 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 CSF2RBP32927 897 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 SPINT3P49223 89 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 TMEM71Q6P5X7 295 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 CCDC13Q8IYE1 715 aa18.32■□□□□ 0.52
CLN6-220ENST00000637450 ZSCAN1Q8NBB4 408 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms