RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 R3HCC1LQ7Z5L2 792 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 ZNF655Q8N720 491 aaPredicted RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 DCSTAMPQ9H295 470 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 EIF2B3Q9NR50 452 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 LACTBL1A8MY62 500 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 OR10H3O60404 316 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 SPATA31C1P0DKV0 1188 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ERP29P30040 261 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 RHDQ02161 417 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ZC3H12AQ5D1E8 599 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 LLGL2Q6P1M3 1020 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ASRGL1Q7L266 308 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 VN1R5Q7Z5H4 357 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 SLITRK4Q8IW52 837 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 SPAG16Q8N0X2 631 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 RAET1EQ8TD07 263 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 C11orf24Q96F05 449 aaPredicted RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 SMARCD1Q96GM5 515 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 SLC4A9Q96Q91 983 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 COPS4Q9BT78 406 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 TKTL2Q9H0I9 626 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FKBP14Q9NWM8 211 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 MCUBQ9NWR8 336 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 PIM2Q9P1W9 311 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FAM50BQ9Y247 325 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 U3KQV3 271 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 I3L521 148 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 WNT7AO00755 349 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CPNE3O75131 537 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 OGNP20774 298 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 MAZP56270 477 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 ZC3H7AQ8IWR0 971 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 ZDHHC15Q96MV8 337 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 C1QTNF1Q9BXJ1 281 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ITPAQ9BY32 194 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 AAASQ9NRG9 546 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.88□□□□□ -0.991e-9■■■□□ 16
VCL-206ENST00000623461 GIT1Q9Y2X7 761 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 POLR3HQ9Y535 204 aaPredicted RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 TSPAN8P19075 237 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CDH4P55283 916 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CDH15P55291 814 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 TIGD6Q17RP2 521 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 PABPC1LQ4VXU2 614 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 PGBD2Q6P3X8 592 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ALDH16A1Q8IZ83 802 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FBXO9Q9UK97 447 aaPredicted RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 BOLA2-SMG1P6H3BVE0 249 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 WWP2O00308 870 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 TOP3BO95985 862 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 CALCAP01258 141 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 IRF1P10914 325 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 XRCC1P18887 633 aaPredicted RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 C11orf91Q3C1V1 193 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ERMP1Q7Z2K6 904 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FAM220AQ7Z4H9 259 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 STX12Q86Y82 276 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FBXO32Q969P5 355 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 MTFMTQ96DP5 389 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 AGAP2Q99490 1192 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 PORCNQ9H237 461 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ABCB9Q9NP78 766 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ARL15Q9NXU5 204 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ADAMDEC1O15204 470 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 EGFRP00533 1210 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CD72P21854 359 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 SLC6A2P23975 617 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 OMPP47874 163 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CD97P48960 835 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ALDH9A1P49189 494 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CTBP1Q13363 440 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 MYLK3Q32MK0 819 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 GARNL3Q5VVW2 1013 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 C7orf43Q8WVR3 580 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 USP7Q93009 1102 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 P2RY11Q96G91 374 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 AURKBQ96GD4 344 aaPredicted RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 CNPPD1Q9BV87 410 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 TRIT1Q9H3H1 467 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 NEK6Q9HC98 313 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CNOT11Q9UKZ1 510 aaKnown RBP8.88□□□□□ -0.99
VCL-206ENST00000623461 DISP2A7MBM2 1401 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 MMP10P09238 476 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 TUFMP49411 452 aaKnown RBP8.87□□□□□ -0.99
VCL-206ENST00000623461 NPTX1Q15818 432 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 SLC9B1Q4ZJI4 515 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 XKR5Q6UX68 686 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 LAPTM4BQ86VI4 370 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 DNERQ8NFT8 737 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 UBE2E3Q969T4 207 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 MED8Q96G25 268 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 MMP27Q9H306 513 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 ATXN3LQ9H3M9 355 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 ZNF879B4DU55 563 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 AXIN1O15169 862 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 SOX10P56693 466 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 ECM1Q16610 540 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 ZNF607Q96SK3 696 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 FEM1AQ9BSK4 669 aa8.87□□□□□ -0.99
VCL-206ENST00000623461 GTPBP2Q9BX10 602 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms