RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 ZRANB3Q5FWF4 1079 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PIWIL4Q7Z3Z4 852 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 BNIPLQ7Z465 357 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 SLC15A3Q8IY34 581 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ELMOD1Q8N336 334 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ZNF555Q8NEP9 628 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NSUN5Q96P11 429 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 C17orf80Q9BSJ5 609 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 C1orf50Q9BV19 199 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 COLEC11Q9BWP8 271 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ZNF385DQ9H6B1 395 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MID1IP1Q9NPA3 183 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 AASSQ9UDR5 926 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 COL1A2P08123 1366 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ZNF638Q14966 1978 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 TTC3P53804 2025 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 UBFD1O14562 309 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NOBOXO60393 691 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 SYNCRIPO60506 623 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 POMCP01189 267 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ALDOCP09972 364 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 HSPA1AP0DMV8 641 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 HSPA1BP0DMV9 641 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ATP6V1E1P36543 226 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NKX2-5P52952 324 aaPredicted RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PWP1Q13610 501 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 DGCR6Q14129 220 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 SQLEQ14534 574 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 POLD3Q15054 466 aaPredicted RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MAPRE1Q15691 268 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PFKFB4Q16877 469 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ANKRD34AQ69YU3 496 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 DNAJC14Q6Y2X3 702 aaPredicted RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 HS3ST5Q8IZT8 346 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 FAM162AQ96A26 154 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ITCHQ96J02 903 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 OLFM1Q99784 485 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ADAM2Q99965 735 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 ULBP1Q9BZM6 244 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NXF3Q9H4D5 531 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MAP10Q9P2G4 905 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NDUFAF1Q9Y375 327 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PRRC2BQ5JSZ5 2229 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 HTR3EA5X5Y0 456 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 CASTOR2A6NHX0 329 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 SEPT4O43236 478 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 TBC1D4O60343 1298 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 APOA1P02647 267 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 HGFP14210 728 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 CAPN3P20807 821 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 RCVRNP35243 200 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MAGEA12P43365 314 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MRPS6P82932 125 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 POU4F1Q01851 419 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PRKCZQ05513 592 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NFYCQ13952 458 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 FRG1Q14331 258 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 RFTN1Q14699 578 aaPredicted RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PTPRCAPQ14761 206 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PCBP1Q15365 356 aaKnown RBP eCLIP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PDCD4Q53EL6 469 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 AGAP9Q5VTM2 703 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PTRHD1Q6GMV3 140 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 NEPROQ6NW34 567 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 RASAL3Q86YV0 1011 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 OR10Q1Q8NGQ4 319 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 TRPC4APQ8TEL6 797 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 RPRD1AQ96P16 312 aaPredicted RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 GPR78Q96P69 363 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 SEPT5Q99719 369 aaPredicted RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MRPL57Q9BQC6 102 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 CORO1BQ9BR76 489 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 TKTL2Q9H0I9 626 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MIR1-1HGQ9H1L0 117 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 PALMDQ9NP74 551 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 EIF2B3Q9NR50 452 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 CD300AQ9UGN4 299 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 CNOT11Q9UKZ1 510 aaKnown RBP6.94□□□□□ -1.3
NEDD9-216ENST00000620854 U3KQV3 271 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 MGAMO43451 1857 aa6.94□□□□□ -1.3
NEDD9-216ENST00000620854 C16orf96A6NNT2 1141 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 ARPC2O15144 300 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 DEAF1O75398 565 aaPredicted RBP6.93□□□□□ -1.3
NEDD9-216ENST00000620854 PIRTP0C851 137 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 RPS9P46781 194 aaKnown RBP6.93□□□□□ -1.3
NEDD9-216ENST00000620854 CD151P48509 253 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 GSSP48637 474 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 NEK2P51955 445 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 LAPTM5Q13571 262 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 CCDC92Q53HC0 331 aaPredicted RBP6.93□□□□□ -1.3
NEDD9-216ENST00000620854 ZNF467Q7Z7K2 595 aaPredicted RBP6.93□□□□□ -1.3
NEDD9-216ENST00000620854 IGFN1Q86VF2 1251 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 C11orf74Q86VG3 221 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 CALML6Q8TD86 181 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 CENPIQ92674 756 aaPredicted RBP6.93□□□□□ -1.3
NEDD9-216ENST00000620854 CENPNQ96H22 339 aaPredicted RBP6.93□□□□□ -1.3
NEDD9-216ENST00000620854 GAD1Q99259 594 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 RHOBTB2Q9BYZ6 727 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 ROGDIQ9GZN7 287 aa6.93□□□□□ -1.3
NEDD9-216ENST00000620854 SEMA4BQ9NPR2 832 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms