RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 DDCP20711 480 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 MAGP20916 626 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 HTR1BP28222 390 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ICAM3P32942 547 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 HTR7P34969 479 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 GRK3P35626 688 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 DPP6P42658 865 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 CD83Q01151 205 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ZNF267Q14586 743 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 MSS51Q4VC12 460 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 VWA5B1Q5TIE3 1220 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 FAM160B1Q5W0V3 765 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PMF1Q6P1K2 205 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 LETMD1Q6P1Q0 360 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 METTL7BQ6UX53 244 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 C15orf39Q6ZRI6 1047 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 BBS7Q8IWZ6 715 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 KIAA1958Q8N8K9 716 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 FNDC5Q8NAU1 212 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 RP9Q8TA86 221 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 FRS2Q8WU20 508 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 GPR20Q99678 358 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 BCL7BQ9BQE9 202 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TSEN34Q9BSV6 310 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 TANC1Q9C0D5 1861 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 OR51B5Q9H339 312 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PNPOQ9NVS9 261 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PPP2R3BQ9Y5P8 575 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 A0A0G2JLL6 359 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 C9IYK1 514 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 STX16-NPEPL1H3BU86 382 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PAPSS1O43252 624 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 STMN1P16949 149 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 CAPGP40121 348 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 UBE3AQ05086 875 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ZMYND11Q15326 602 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 EEF1DP3Q658K8 133 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ERMP1Q7Z2K6 904 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 HDDC2Q7Z4H3 204 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PRSS42Q7Z5A4 293 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PRRT2Q7Z6L0 340 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 ERO1BQ86YB8 467 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 METTL4Q8N3J2 472 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 FAM156AQ8NDB6 213 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 SGK3Q96BR1 496 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 RCN3Q96D15 328 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TRAF4Q9BUZ4 470 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 TMEM168Q9H0V1 697 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TRMT6Q9UJA5 497 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 FBXO5Q9UKT4 447 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 MAPRE3Q9UPY8 281 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 CNTNAP2Q9UHC6 1331 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PIK3R2O00459 728 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ZNF195O14628 629 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 AVILO75366 819 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 SNAP29O95721 258 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 IQCF3P0C7M6 154 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ZNF286BP0CG31 522 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 C7P10643 843 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 UNGP13051 313 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 NPR3P17342 541 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ACO1P21399 889 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 PTX3P26022 381 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 PRKAR1BP31321 381 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 GJA5P36382 358 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 CDH8P55286 799 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 RPL7AP62424 266 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 GCNT1Q02742 428 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PPIL2Q13356 520 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ART3Q13508 389 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TARBP2Q15633 366 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 FNBP1LQ5T0N5 605 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 EFCAB12Q6NXP0 572 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 PCGF5Q86SE9 256 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TBC1D21Q8IYX1 336 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 DHRSXQ8N5I4 330 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ARL6IP6Q8N6S5 226 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ARRDC4Q8NCT1 418 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 ZFAND1Q8TCF1 268 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 PBXIP1Q96AQ6 731 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 LRRC39Q96DD0 335 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 CPB2Q96IY4 423 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 NIFKQ9BYG3 293 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 PPA2Q9H2U2 334 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 STOML2Q9UJZ1 356 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 KLF2Q9Y5W3 355 aaPredicted RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 MCM3APO60318 1980 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 IGKV6D-21A0A0A0MT36 114 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 RNF103-CHMP3A0A140T963 221 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 A0A1W2PRG6 482 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ZNF487B1APH4 448 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ZBTB42B2RXF5 422 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 I3L521 148 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 MUSKO15146 869 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 LIASO43766 372 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 MSCO60682 206 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TIPRLO75663 272 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 VTNP04004 478 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 CYP2A6P11509 494 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms