RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TCEAL2Q9H3H9 227 aaPredicted RBP16.12■□□□□ 0.17
LSM4-206ENST00000600289 TRABDQ9H4I3 376 aa16.12■□□□□ 0.17
LSM4-206ENST00000600289 ZFYVE1Q9HBF4 777 aa16.12■□□□□ 0.17
LSM4-206ENST00000600289 RAD18Q9NS91 495 aa16.12■□□□□ 0.17
LSM4-206ENST00000600289 NCKIPSDQ9NZQ3 722 aa16.12■□□□□ 0.17
LSM4-206ENST00000600289 ZNF711Q9Y462 761 aa16.12■□□□□ 0.17
LSM4-206ENST00000600289 COL27A1Q8IZC6 1860 aaPredicted RBP16.12■□□□□ 0.17
LSM4-206ENST00000600289 A0A0U1RQS6 177 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 TCRBV7S2A1N4TA0A589 114 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 CKMT2P17540 419 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 GEMP55040 296 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 ELOCQ15369 112 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 PRRT3Q5FWE3 981 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 FAXCQ5TGI0 409 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 RAET1GQ6H3X3 334 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 LVRNQ6Q4G3 990 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 LYSMD3Q7Z3D4 306 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 SLC13A5Q86YT5 568 aaPredicted RBP16.11■□□□□ 0.17
LSM4-206ENST00000600289 LMX1AQ8TE12 382 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 OR1E3Q8WZA6 343 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 SLC39A7Q92504 469 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 ANP32BQ92688 251 aaKnown RBP16.11■□□□□ 0.17
LSM4-206ENST00000600289 EID2BQ96D98 161 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 RTP4Q96DX8 246 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 PDXPQ96GD0 296 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 COX14Q96I36 57 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 WDR24Q96S15 920 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 FAM118BQ9BPY3 351 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 LGR4Q9BXB1 951 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 TLR10Q9BXR5 811 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 CAAP1Q9H8G2 361 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 C10orf88Q9H8K7 445 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 FGF22Q9HCT0 170 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 UBP1Q9NZI7 540 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 HACD3Q9P035 362 aa16.11■□□□□ 0.17
LSM4-206ENST00000600289 R3HDM2Q9Y2K5 976 aaKnown RBP16.11■□□□□ 0.17
LSM4-206ENST00000600289 AAR2Q9Y312 384 aaKnown RBP16.11■□□□□ 0.17
LSM4-206ENST00000600289 ATMQ13315 3056 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 TK2O00142 265 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 FFAR2O15552 330 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 GCATO75600 419 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 TNFP01375 233 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 FGF1P05230 155 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 CKMT1AP12532 417 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 TNNT3P45378 269 aaPredicted RBP16.1■□□□□ 0.17
LSM4-206ENST00000600289 GPR1P46091 355 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 SLC1A5Q15758 541 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 SIRPB2Q5JXA9 342 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 PDPK2PQ6A1A2 396 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 RFLNAQ6ZTI6 216 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 HID1Q8IV36 788 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 SCAMP4Q969E2 229 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 TSACCQ96A04 125 aaPredicted RBP16.1■□□□□ 0.17
LSM4-206ENST00000600289 SCARF2Q96GP6 870 aaPredicted RBP16.1■□□□□ 0.17
LSM4-206ENST00000600289 BOCQ9BWV1 1114 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 CLPBQ9H078 707 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 KCNF1Q9H3M0 494 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 FAM83DQ9H4H8 585 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 EVA1BQ9NVM1 165 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 CD84Q9UIB8 345 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 SLC17A4Q9Y2C5 497 aa16.1■□□□□ 0.17
LSM4-206ENST00000600289 LY6G6EA0A0G2JKS1 128 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 PRSS38A1L453 326 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 GOLGA8CPA6NN73 597 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 RFPL3O75679 317 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 CEACAM5P06731 702 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 IVLP07476 585 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 PSMB4P28070 264 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 ADRA1AP35348 466 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 HMGCLP35914 325 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 PRPSAP1Q14558 356 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 OASLQ15646 514 aaKnown RBP16.09■□□□□ 0.17
LSM4-206ENST00000600289 C6orf132Q5T0Z8 1188 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 KCTD16Q68DU8 428 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 KDELC2Q7Z4H8 507 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 IPMKQ8NFU5 416 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 CCDC110Q8TBZ0 833 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 DTX3LQ8TDB6 740 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 APOLD1Q96LR9 279 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 RIOK2Q9BVS4 552 aaKnown RBP16.09■□□□□ 0.17
LSM4-206ENST00000600289 FSD1LQ9BXM9 530 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 ZKSCAN5Q9Y2L8 839 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 SPO11Q9Y5K1 396 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 U3KQA8 63 aa16.09■□□□□ 0.17
LSM4-206ENST00000600289 ZSCAN12O43309 604 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 LIASO43766 372 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 GP1BAP07359 652 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 ANXA6P08133 673 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 CTSEP14091 401 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 STIP1P31948 543 aaKnown RBP16.08■□□□□ 0.16
LSM4-206ENST00000600289 DUSP3P51452 185 aaPredicted RBP16.08■□□□□ 0.16
LSM4-206ENST00000600289 DNAJC3Q13217 504 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 SIX1Q15475 284 aaPredicted RBP16.08■□□□□ 0.16
LSM4-206ENST00000600289 SMAD1Q15797 465 aaKnown RBP16.08■□□□□ 0.16
LSM4-206ENST00000600289 PARP6Q2NL67 630 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 P3H1Q32P28 736 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 ZDHHC20Q5W0Z9 365 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 RANBP10Q6VN20 620 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 NYAP1Q6ZVC0 841 aa16.08■□□□□ 0.16
LSM4-206ENST00000600289 TMPRSS7Q7RTY8 843 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms