RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PRR5P85299 388 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 OTUD3Q5T2D3 398 aaPredicted RBP20.41■□□□□ 0.86
UPF1-207ENST00000599848 GKN2Q86XP6 184 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 SLC4A11Q8NBS3 891 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 USP6NLQ92738 828 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 NSMCE3Q96MG7 304 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 TCF12Q99081 682 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 GSDMCQ9BYG8 508 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 RAP2CQ9Y3L5 183 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 H0YGN5 161 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 CCDC92Q53HC0 331 aaPredicted RBP20.4■□□□□ 0.86
UPF1-207ENST00000599848 MZT2BQ6NZ67 158 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 SPATA19Q7Z5L4 167 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 DBF4BQ8NFT6 615 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 EXOC2Q96KP1 924 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 HNRNPABQ99729 332 aaKnown RBP20.4■□□□□ 0.86
UPF1-207ENST00000599848 BTNL10A8MVZ5 291 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 B4GALT5O43286 388 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 LIASO43766 372 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 STBD1O95210 358 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 TNFSF9P41273 254 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 CHN2P52757 468 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 NUP54Q7Z3B4 507 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 ROBO3Q96MS0 1386 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 C8GP07360 202 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 ITGB5P18084 799 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 SEC13P55735 322 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 MED27Q6P2C8 311 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 SIPA1Q96FS4 1042 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 MRPL45Q9BRJ2 306 aaKnown RBP20.4■□□□□ 0.86
UPF1-207ENST00000599848 E9PAM4 449 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 NIPAL1Q6NVV3 410 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 STK32AQ8WU08 396 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 PTGFRNQ9P2B2 879 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 NCANO14594 1321 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 SUV39H1O43463 412 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 ZNF846Q147U1 533 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 P4HA3Q7Z4N8 544 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 MCMBPQ9BTE3 642 aa20.4■□□□□ 0.86
UPF1-207ENST00000599848 FFAR3O14843 346 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 GPR42O15529 346 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 ADGRB2O60241 1585 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 OR10H3O60404 316 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 UBTFL6P0CB48 400 aaPredicted RBP20.39■□□□□ 0.86
UPF1-207ENST00000599848 TRAF3Q13114 568 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 ATG14Q6ZNE5 492 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 CDYL2Q8N8U2 506 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 ING5Q8WYH8 240 aa20.39■□□□□ 0.86
UPF1-207ENST00000599848 PSMD7P51665 324 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 CPSF6Q16630 551 aaKnown RBP eCLIP20.39■□□□□ 0.85
UPF1-207ENST00000599848 NATD1Q8N6N6 113 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 ACE2Q9BYF1 805 aaPredicted RBP20.39■□□□□ 0.85
UPF1-207ENST00000599848 BBIP1A8MTZ0 92 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 PI15O43692 258 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 TSPAN1O60635 241 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.39■□□□□ 0.854e-7■■■□□ 17.3
UPF1-207ENST00000599848 TEX44Q53QW1 395 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 UBXN11Q5T124 520 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 LIPMQ5VYY2 423 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 REXO1L1PQ8IX06 675 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 GTF2IRD1Q9UHL9 959 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 STX16-NPEPL1H3BU86 382 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 CLDN5O00501 218 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 STX16O14662 325 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 UGT2B17O75795 530 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 GDI1P31150 447 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 L1CAMP32004 1257 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 IL10RBQ08334 325 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 PIWIL2Q8TC59 973 aaKnown RBP20.39■□□□□ 0.85
UPF1-207ENST00000599848 RHOJQ9H4E5 214 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 ALKBH4Q9NXW9 302 aa20.39■□□□□ 0.85
UPF1-207ENST00000599848 CSTF2P33240 577 aaKnown RBP eCLIP20.38■□□□□ 0.85
UPF1-207ENST00000599848 TMED10P49755 219 aaKnown RBP20.38■□□□□ 0.85
UPF1-207ENST00000599848 ZNF776Q68DI1 518 aaPredicted RBP20.38■□□□□ 0.85
UPF1-207ENST00000599848 SLC30A9Q6PML9 568 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 MPP5Q8N3R9 675 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 SLC43A3Q8NBI5 491 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 PGM2Q96G03 612 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 TRIM43BA6NCK2 446 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 BCL10O95999 233 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 PLGP00747 810 aaPredicted RBP20.38■□□□□ 0.85
UPF1-207ENST00000599848 FNBP1LQ5T0N5 605 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 TMPRSS11BQ86T26 416 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 PROSER1Q86XN7 944 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 FAM81AQ8TBF8 368 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 ZFRQ96KR1 1074 aaKnown RBP20.38■□□□□ 0.85
UPF1-207ENST00000599848 FAM234BA2RU67 622 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 STK16O75716 305 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 CLPTM1O96005 669 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 SERPINA1P01009 418 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 SMPD1P17405 629 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 CRHR2Q13324 411 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 AP3S1Q92572 193 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 CCNB1IP1Q9NPC3 277 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 SDHAF3Q9NRP4 125 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 INTS10Q9NVR2 710 aaKnown RBP20.38■□□□□ 0.85
UPF1-207ENST00000599848 ING3Q9NXR8 418 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 IQGAP1P46940 1657 aa20.38■□□□□ 0.85
UPF1-207ENST00000599848 BUD23O43709 281 aaKnown RBP20.38■□□□□ 0.85
UPF1-207ENST00000599848 PEX11AO75192 247 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms