RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 EPB41L1Q9H4G0 881 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 GOLGA6CA6NDK9 693 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 GOLGA6BA6NDN3 693 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 OR5K4A6NMS3 321 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 B4E171 279 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 PROSCO94903 275 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 TPM3P06753 285 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 H2AFZP0C0S5 128 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 GOLGA6DP0CG33 693 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 THRAP10827 490 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 AK4P27144 223 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 CSTF2P33240 577 aaKnown RBP eCLIP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 TSPAN7P41732 249 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 MAPK10P53779 464 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 FANCCQ00597 558 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 C16orf72Q14CZ0 275 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 AMZ1Q400G9 498 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ANKRD20A8PQ5CZ79 823 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 WDR74Q6RFH5 385 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ZNF574Q6ZN55 896 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 H2AFVQ71UI9 128 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 SFRP1Q8N474 314 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 OR10G6Q8NH81 332 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 CCHCR1Q8TD31 782 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 CPLX3Q8WVH0 158 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ZNF830Q96NB3 372 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ARHGAP9Q9BRR9 750 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ZPBPQ9BS86 351 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 HERPUD2Q9BSE4 406 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ADGRE3Q9BY15 652 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 SEMA4CQ9C0C4 833 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 RDH14Q9HBH5 336 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 PCDH9Q9HC56 1237 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 SARS2Q9NP81 518 aaKnown RBP13.53□□□□□ -0.24
TRIM28-211ENST00000597968 RAD18Q9NS91 495 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 RBM22Q9NW64 420 aaKnown RBP eCLIP13.53□□□□□ -0.241e-11■■■■■ 53.6
TRIM28-211ENST00000597968 GOLGA6AQ9NYA3 693 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 KCNK4Q9NYG8 393 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 PKD2L2Q9NZM6 624 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ZNF462Q96JM2 2506 aa13.53□□□□□ -0.24
TRIM28-211ENST00000597968 ASH1LQ9NR48 2969 aaKnown RBP13.52□□□□□ -0.24
TRIM28-211ENST00000597968 PPM1DO15297 605 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 DUX1O43812 170 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 MFSD11O43934 449 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 CTPS1P17812 591 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 ETV5P41161 510 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 POLD2P49005 469 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 CLCNKAP51800 687 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 EPHA4P54764 986 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 TGIF1Q15583 401 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 NFKBIBQ15653 356 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 SLC14A2Q15849 920 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 PDPK2PQ6A1A2 396 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 SFTPA2Q8IWL1 248 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 ARRDC2Q8TBH0 407 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 CCDC74BQ96LY2 380 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 SRPK1Q96SB4 655 aaKnown RBP13.52□□□□□ -0.25
TRIM28-211ENST00000597968 NUDT22Q9BRQ3 303 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 XPO4Q9C0E2 1151 aaKnown RBP13.52□□□□□ -0.25
TRIM28-211ENST00000597968 CARD9Q9H257 536 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 STARD5Q9NSY2 213 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 FOXJ2Q9P0K8 574 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 NFKBIL1Q9UBC1 381 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-211ENST00000597968 NENFQ9UMX5 172 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 PCDHGA4Q9Y5G9 962 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.52□□□□□ -0.252e-11■■■■■ 40.9
TRIM28-211ENST00000597968 ST14Q9Y5Y6 855 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 SCN8AQ9UQD0 1980 aa13.52□□□□□ -0.25
TRIM28-211ENST00000597968 KIF26BQ2KJY2 2108 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 BSNQ9UPA5 3926 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 KIR2DS5A0A0G2JLQ3 304 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 A0A0G2JNG1 304 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 ANKRD66B4E2M5 251 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 GOLGA6L19H0YKK7 550 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 KIR2DS3K7RE56 304 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 DNAJC6O75061 913 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 PRLP01236 227 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 CD48P09326 243 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 FGF3P11487 239 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 SSR1P43307 286 aaKnown RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 SPINT3P49223 89 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 MMRN1Q13201 1228 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 KIR2DS5Q14953 304 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 LINC00303Q3SY05 128 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 DCAF12Q5T6F0 453 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 HENMT1Q5T8I9 393 aaKnown RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 SLC9B2Q86UD5 537 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 CCDC13Q8IYE1 715 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 CTNNBL1Q8WYA6 563 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 SCAMP4Q969E2 229 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 AHCYL2Q96HN2 611 aaKnown RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 BTBD6Q96KE9 485 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 CATSPER2Q96P56 530 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 SLC38A3Q99624 504 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 EFHD1Q9BUP0 239 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 MLPHQ9BV36 600 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-211ENST00000597968 BRD8Q9H0E9 1235 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 ADNPQ9H2P0 1102 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms