RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 PCDHGC4Q9Y5F7 938 aa16.4■□□□□ 0.22
SHKBP1-215ENST00000597649 TRBV23OR9-2A0A075B6M9 112 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 A0A0U1RQS6 177 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 LOC101059948A0A1B0GTJ6 334 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 ZNF891A8MT65 544 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 HTRA2O43464 458 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 HEXIM1O94992 359 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 H2AFZP0C0S5 128 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 ERCC2P18074 760 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 LHCGRP22888 699 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 HTR7P34969 479 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 SLC10A7Q0GE19 358 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 DENND2CQ68D51 928 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 TMEM71Q6P5X7 295 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 Q6ZVL8 140 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 H2AFVQ71UI9 128 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 TIPARPQ7Z3E1 657 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 ZNF761Q86XN6 746 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 FAM129CQ86XR2 697 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 LRRC8AQ8IWT6 810 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 UNC5BQ8IZJ1 945 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 PAF1Q8N7H5 531 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 SPOCK2Q92563 424 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 DTD2Q96FN9 168 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 SCARF2Q96GP6 870 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 PSKH2Q96QS6 385 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 PEBP4Q96S96 227 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 KCTD15Q96SI1 283 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 ASPSCR1Q9BZE9 553 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 DHX35Q9H5Z1 703 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 PARVAQ9NVD7 372 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 CNOT8Q9UFF9 292 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 ANAPC2Q9UJX6 822 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 AP4E1Q9UPM8 1137 aa16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 EPN1Q9Y6I3 576 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-215ENST00000597649 EIF3CLB5ME19 914 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 DFFAO00273 331 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 EEF2KO00418 725 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 ZW10O43264 779 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 NDUFA10O95299 355 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 EML2O95834 649 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 NTRK1P04629 796 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 IVLP07476 585 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 PRKAR1AP10644 381 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 VIPR1P32241 457 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 MAGEA1P43355 309 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 AP1S1P61966 158 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 IL10RBQ08334 325 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 BIRC2Q13490 618 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 RFTN1Q14699 578 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 DCAF12Q5T6F0 453 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 DCUN1D2Q6PH85 259 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 PGBD5Q8N414 524 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 CTNNBL1Q8WYA6 563 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 RTP4Q96DX8 246 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 ABHD17AQ96GS6 310 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 PDLIM2Q96JY6 352 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 CATSPER2Q96P56 530 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 PSMG3-AS1Q96PY0 264 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 EIF3CQ99613 913 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 CTRCQ99895 268 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 SP110Q9HB58 689 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 MRPL47Q9HD33 250 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 KCNK4Q9NYG8 393 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 DONSONQ9NYP3 566 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 PLAAQ9Y263 795 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 TMEM98Q9Y2Y6 226 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 SCINQ9Y6U3 715 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 ITPR2Q14571 2701 aa16.38■□□□□ 0.21
SHKBP1-215ENST00000597649 ICE1Q9Y2F5 2266 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 A8MU76 341 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 ATMINO43313 823 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 PEX11BO96011 259 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 SOD1P00441 154 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 DESP17661 470 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 OAS2P29728 719 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 ACTR1BP42025 376 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 ACTR1AP61163 376 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 LBRQ14739 615 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 ATP1A1-AS1Q5TC04 95 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 DOK6Q6PKX4 331 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 RAD9BQ6WBX8 426 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 RFX8Q6ZV50 586 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 CYP4V2Q6ZWL3 525 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 TECPR1Q7Z6L1 1165 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 TSPAN33Q86UF1 283 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 TMEM139Q8IV31 216 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 NRSN1Q8IZ57 195 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 C9orf43Q8TAL5 461 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 PDCD6IPQ8WUM4 868 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 SMIM14Q96QK8 99 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 THAP2Q9H0W7 228 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 NOD2Q9HC29 1040 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 APMAPQ9HDC9 416 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 PCSK1NQ9UHG2 260 aa16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 PCYT1BQ9Y5K3 369 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-215ENST00000597649 GOLGA6CA6NDK9 693 aa16.36■□□□□ 0.21
SHKBP1-215ENST00000597649 GOLGA6BA6NDN3 693 aa16.36■□□□□ 0.21
SHKBP1-215ENST00000597649 NPIPB15A6NHN6 443 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-215ENST00000597649 CAPN5O15484 640 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms