RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 SRPK1Q96SB4 655 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 ETNK1Q9HBU6 452 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 CYP4F12Q9HCS2 524 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 ARFGAP3Q9NP61 516 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 PIH1D1Q9NWS0 290 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 SPASTQ9UBP0 616 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 FTSJ1Q9UET6 329 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 PCOLCE2Q9UKZ9 415 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 SNX12Q9UMY4 172 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 DOLKQ9UPQ8 538 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 DRG1Q9Y295 367 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 TMEM98Q9Y2Y6 226 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 SCN8AQ9UQD0 1980 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 CACNA1EQ15878 2313 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 CNOT1A5YKK6 2376 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 PGRMC1O00264 195 aaKnown RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 PDE2AO00408 941 aaPredicted RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 AQP9O43315 295 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 MYCLP1P12525 358 aaPredicted RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 NME1P15531 152 aaKnown RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 KELP23276 732 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 RPL22P35268 128 aaKnown RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 ADRA1AP35348 466 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 TRIM23P36406 574 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 FDFT1P37268 417 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 BLKP51451 505 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 TMPRSS15P98073 1019 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 CDK3Q00526 305 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 DPTQ07507 201 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 SEPT6Q14141 434 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 PTPRCAPQ14761 206 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 DEFB133Q30KQ1 61 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 KCTD16Q68DU8 428 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 RANBP10Q6VN20 620 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 PPP1R21Q6ZMI0 780 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 DBX2Q6ZNG2 339 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 ZNF765Q7L2R6 523 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 PRELID2Q8N945 189 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 ZNF548Q8NEK5 533 aaPredicted RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 OR1E3Q8WZA6 343 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 HIC2Q96JB3 615 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 NAP1L3Q99457 506 aaPredicted RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 NAPGQ99747 312 aaPredicted RBP11.03□□□□□ -0.64
LIG1-211ENST00000596457 TEX101Q9BY14 249 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 LRRC40Q9H9A6 602 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 RAB6BQ9NRW1 208 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 RAD18Q9NS91 495 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 HOMER3Q9NSC5 361 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 HACD3Q9P035 362 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 PAK5Q9P286 719 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 ZKSCAN5Q9Y2L8 839 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 PKP3Q9Y446 797 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 GPSM3Q9Y4H4 160 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 ARL5AQ9Y689 179 aa11.03□□□□□ -0.64
LIG1-211ENST00000596457 PRSS38A1L453 326 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 RGSL1A5PLK6 1076 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 NEMP2A6NFY4 417 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 FADS2P1A8MWK0 482 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 TRIM38O00635 465 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 STX7O15400 261 aaKnown RBP11.02□□□□□ -0.65
LIG1-211ENST00000596457 SIGLEC6O43699 453 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 SOD1P00441 154 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 PYGLP06737 847 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 ANXA6P08133 673 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 CELA2BP08218 269 aaPredicted RBP11.02□□□□□ -0.65
LIG1-211ENST00000596457 ALPPL2P10696 532 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 MYF5P13349 255 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 BPIP17213 487 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 GNPDA1P46926 289 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 VPS41P49754 854 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 HK3P52790 923 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 BASP1P80723 227 aaKnown RBP11.02□□□□□ -0.65
LIG1-211ENST00000596457 DAB2P98082 770 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 DNAJC3Q13217 504 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 ZNF648Q5T619 568 aaPredicted RBP11.02□□□□□ -0.65
LIG1-211ENST00000596457 KANSL1Q7Z3B3 1105 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 TTC30BQ8N4P2 665 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 PNPLA1Q8N8W4 532 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 DNAAF3Q8N9W5 541 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 OR52K1Q8NGK4 314 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 GDAP1Q8TB36 358 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 RTP4Q96DX8 246 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 PDXPQ96GD0 296 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 CDC6Q99741 560 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 LRRC61Q9BV99 259 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 TRABDQ9H4I3 376 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 CARS2Q9HA77 564 aaKnown RBP11.02□□□□□ -0.65
LIG1-211ENST00000596457 FGF22Q9HCT0 170 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 TTC7AQ9ULT0 858 aaPredicted RBP11.02□□□□□ -0.65
LIG1-211ENST00000596457 KCTD3Q9Y597 815 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 NAV2Q8IVL1 2488 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 CEP295Q9C0D2 2601 aa11.02□□□□□ -0.65
LIG1-211ENST00000596457 NBEAQ8NFP9 2946 aa11.01□□□□□ -0.65
LIG1-211ENST00000596457 GOLGA6L10A0A0M3HER8 536 aa11.01□□□□□ -0.65
LIG1-211ENST00000596457 CCDC78A2IDD5 438 aa11.01□□□□□ -0.65
LIG1-211ENST00000596457 CTAGE9A4FU28 777 aa11.01□□□□□ -0.65
LIG1-211ENST00000596457 C2orf81A6NN90 581 aa11.01□□□□□ -0.65
LIG1-211ENST00000596457 CBFA2T3O75081 653 aa11.01□□□□□ -0.65
LIG1-211ENST00000596457 SLC25A14O95258 325 aaPredicted RBP11.01□□□□□ -0.65
LIG1-211ENST00000596457 AP2A1O95782 977 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms