RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 OR2AG2A6NM03 316 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 EVPLLA8MZ36 301 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 TMEM114B3SHH9 223 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 PRKCGP05129 697 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 ENO3P13929 434 aaPredicted RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 ATF6P18850 670 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 DRD1P21728 446 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 MSLNQ13421 630 aaPredicted RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 ELAVL3Q14576 367 aaKnown RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 PFKFB4Q16877 469 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 INAVAQ3KP66 663 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 TMEM220Q6QAJ8 160 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 TMPRSS6Q8IU80 811 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 FIBINQ8TAL6 211 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 MFSD3Q96ES6 412 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 ZNF641Q96N77 438 aaPredicted RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 TSGA13Q96PP4 275 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 TUBGCP5Q96RT8 1024 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 CXCL16Q9H2A7 254 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 POLR3BQ9NW08 1133 aaPredicted RBP9.81□□□□□ -0.84
LIG3-216ENST00000593099 EMC3Q9P0I2 261 aa9.81□□□□□ -0.84
LIG3-216ENST00000593099 METTL18O95568 372 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 NSG1P42857 185 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ANXA11P50995 505 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 NAA20P61599 178 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 HPCAP84074 193 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PON2Q15165 354 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ESRP1Q6NXG1 681 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 SHQ1Q6PI26 577 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 MPP5Q8N3R9 675 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PQLC3Q8N755 202 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 RFWD2Q8NHY2 731 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PGAP3Q96FM1 320 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 USP15Q9Y4E8 981 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 FAM72CH0Y354 149 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 KRT16P08779 473 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 H2AFXP16104 143 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 GDF10P55107 478 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 IFI35P80217 286 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 CYP1B1Q16678 543 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 FAM72AQ5TYM5 149 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 FAM72DQ6L9T8 149 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 FAM72BQ86X60 149 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 CFAP206Q8IYR0 622 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PTGR2Q8N8N7 351 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 LRRN4CLQ8ND94 238 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 LZICQ8WZA0 190 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 INPP5DQ92835 1189 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 RAB7BQ96AH8 199 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 QRFPRQ96P65 431 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PHACTR1Q9C0D0 580 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 TRBV23OR9-2A0A075B6M9 112 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 TCRBV21S2A2A0A5A6 115 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 CCDC189A1A4V9 331 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 CCL22O00626 93 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 SOCS5O75159 536 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 E2F6O75461 281 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ATP5F1P24539 256 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 PBX2P40425 430 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PTGER3P43115 390 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ARRB1P49407 418 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 ZNF844Q08AG5 666 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 DGKKQ5KSL6 1271 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 KIAA0930Q6ICG6 404 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 CHST15Q7LFX5 561 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 ITFG1Q8TB96 612 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ANKRD7Q92527 254 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 NXPE3Q969Y0 559 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PGM2Q96G03 612 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 PSKH2Q96QS6 385 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 KLF16Q9BXK1 252 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 ACTR5Q9H9F9 607 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 ZNF334Q9HCZ1 680 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 MIEF1Q9NQG6 463 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 SLC2A4RGQ9NR83 387 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 CORO1CQ9ULV4 474 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 USP3Q9Y6I4 520 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 RHPN2P1A8MT19 583 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ANKRD66B4E2M5 251 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ABLIM3O94929 683 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 GSRP00390 522 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 GOT2P00505 430 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 OGNP20774 298 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 BGNP21810 368 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 STK19P49842 368 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 ST13P50502 369 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 CACNA2D1P54289 1103 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 GSCP56915 257 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 NKX3-2P78367 333 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 DUSP6Q16828 381 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ANKRD22Q5VYY1 191 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ENPP7Q6UWV6 458 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 UBE2R2Q712K3 238 aaPredicted RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 ERN2Q76MJ5 926 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 SNX20Q7Z614 316 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ZBTB2Q8N680 514 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 TXNDC5Q8NBS9 432 aaKnown RBP9.8□□□□□ -0.84
LIG3-216ENST00000593099 GSTCDQ8NEC7 633 aa9.8□□□□□ -0.84
LIG3-216ENST00000593099 ZSCAN5AQ9BUG6 496 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms