RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PIM3Q86V86 326 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 PIANPQ8IYJ0 282 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 GRIN3AQ8TCU5 1115 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 KCNJ9Q92806 393 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 L3HYPDHQ96EM0 354 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ASB2Q96Q27 587 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 SMIM14Q96QK8 99 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 EBF4Q9BQW3 602 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ALG9Q9H6U8 611 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 TLE6Q9H808 572 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 COG4Q9H9E3 785 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 BPIFA1Q9NP55 256 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 TMCO1Q9UM00 188 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 TRIM33Q9UPN9 1127 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 PDE4DIPQ5VU43 2346 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 TRPC5OSA6NMA1 111 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 SYCE1LA8MT33 242 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 WASH3PC4AMC7 463 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 PER2O15055 1255 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 CHRNGP07510 517 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 ALPIP09923 528 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 NFKBIAP25963 317 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 HNF1BP35680 557 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 MNAT1P51948 309 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 ALDH18A1P54886 795 aaKnown RBP14.12□□□□□ -0.15
LIG3-205ENST00000585941 ACCSLQ4AC99 568 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 ZNF697Q5TEC3 545 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 TPRG1Q6ZUI0 275 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 TAS2R42Q7RTR8 314 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 MAVSQ7Z434 540 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 SNX20Q7Z614 316 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 SPRED2Q7Z698 418 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 TTC7BQ86TV6 843 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 PNPLA1Q8N8W4 532 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 STAG3L4Q8TBR4 150 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 WFIKKN2Q8TEU8 576 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 KIAA1191Q96A73 305 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 SGF29Q96ES7 293 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 SCRN2Q96FV2 425 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 ZSWIM3Q96MP5 696 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 BIRC8Q96P09 236 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 BTBD10Q9BSF8 475 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 CCDC106Q9BWC9 280 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 LINC00597Q9H2U6 94 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 MRGBPQ9NV56 204 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIG3-205ENST00000585941 TAGLN3Q9UI15 199 aa14.12□□□□□ -0.15
LIG3-205ENST00000585941 TRMT6Q9UJA5 497 aaKnown RBP14.12□□□□□ -0.15
LIG3-205ENST00000585941 H3BMM5 538 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 PRMT5O14744 637 aaPredicted RBP14.11□□□□□ -0.15
LIG3-205ENST00000585941 ZBTB14O43829 449 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ADH1CP00326 375 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ASLP04424 464 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 KRT16P08779 473 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 PRSS56P0CW18 603 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ZNF7P17097 686 aaPredicted RBP14.11□□□□□ -0.15
LIG3-205ENST00000585941 RPS3P23396 243 aaKnown RBP eCLIP14.11□□□□□ -0.15
LIG3-205ENST00000585941 MPSTP25325 297 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 CCNHP51946 323 aaPredicted RBP14.11□□□□□ -0.15
LIG3-205ENST00000585941 CDKN3Q16667 212 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ACAD11Q709F0 780 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ADIPOR2Q86V24 386 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 PARP9Q8IXQ6 854 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 LSMEM2Q8N112 164 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 KIF2BQ8N4N8 673 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 MCCC1Q96RQ3 725 aaPredicted RBP14.11□□□□□ -0.15
LIG3-205ENST00000585941 CCDC28BQ9BUN5 200 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 UNKQ9C0B0 810 aaKnown RBP14.11□□□□□ -0.15
LIG3-205ENST00000585941 SFXN1Q9H9B4 322 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ARMCX1Q9P291 453 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 FBXO10Q9UK96 956 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 ERVW-1Q9UQF0 538 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 WNT6Q9Y6F9 365 aa14.11□□□□□ -0.15
LIG3-205ENST00000585941 E5RI56 91 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 HOXC11O43248 304 aaPredicted RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 KERAO60938 352 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 PRAMEF1O95521 474 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 SRPRAP08240 638 aaKnown RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 SPAM1P38567 509 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 CDKN1CP49918 316 aaPredicted RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 IL2P60568 153 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 HERVK_113P63132 956 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 DUSP6Q16828 381 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 PAQR3Q6TCH7 311 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 FRMD7Q6ZUT3 714 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 RBM23Q86U06 439 aaKnown RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 RBFAQ8N0V3 343 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ARHGAP24Q8N264 748 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ING5Q8WYH8 240 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 PTERQ96BW5 349 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 EID2BQ96D98 161 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 CDCA3Q99618 268 aaPredicted RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 GPR21Q99679 349 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 TBC1D10AQ9BXI6 508 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ERVK-6Q9BXR3 956 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 CLPBQ9H078 707 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 P2RY12Q9H244 342 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 TCF7L2Q9NQB0 619 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 DZANK1Q9NVP4 752 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 DUS2Q9NX74 493 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms