RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 INPP4BO15327 924 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 NOBOXO60393 691 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 RPLP0P05388 317 aaKnown RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 PECAM1P16284 738 aaPredicted RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 FECHP22830 423 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 ADCY8P40145 1251 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 ABCG1P45844 678 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 CCL7P80098 99 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 CTBSQ01459 385 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 HLTFQ14527 1009 aaKnown RBP eCLIP12.31□□□□□ -0.44
SS18-225ENST00000585121 COL28A1Q2UY09 1125 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 CERCAMQ5T4B2 595 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 SLC30A9Q6PML9 568 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 MARK2Q7KZI7 788 aaKnown RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 PID1Q7Z2X4 250 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 ZC3H18Q86VM9 953 aaKnown RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 CCNJLQ8IV13 435 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 WDR36Q8NI36 951 aaKnown RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 SNIP1Q8TAD8 396 aaKnown RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 HAUS1Q96CS2 278 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 ATXN7L3BQ96GX2 97 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 TMEM74Q96NL1 305 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 OR2M4Q96R27 311 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 TRIB3Q96RU7 358 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 BAG1Q99933 345 aaPredicted RBP12.31□□□□□ -0.44
SS18-225ENST00000585121 HEMGNQ9BXL5 484 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 LRRN3Q9H3W5 708 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 MAGEE1Q9HCI5 957 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 THSD1Q9NS62 852 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 FAM153AQ9UHL3 310 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 ENTPD2Q9Y5L3 495 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 CCDC187A0A096LP49 1063 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 CCDC66A2RUB6 948 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 RHPN2P1A8MT19 583 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 H7C0C1 242 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 TLX3O43711 291 aaPredicted RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 NUDT21O43809 227 aaKnown RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 PMPCBO75439 489 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 NDST3O95803 873 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SOD1P00441 154 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 CTNNA2P26232 953 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 CTNNA1P35221 906 aaKnown RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 EIF2S3P41091 472 aaKnown RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 ACTR1BP42025 376 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 ATP5OP48047 213 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 VAV2P52735 878 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 RWDD2BP57060 319 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 PCBP4P57723 403 aaKnown RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 ERVPABLB-1P60509 514 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 ACTR1AP61163 376 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 LRP8Q14114 963 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 C3orf38Q5JPI3 329 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 HENMT1Q5T8I9 393 aaKnown RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 FOXR1Q6PIV2 292 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 BBS12Q6ZW61 710 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 LYSMD3Q7Z3D4 306 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 TRIM74Q86UV6 250 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 NRROSQ86YC3 692 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 ARL14Q8N4G2 192 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SPATA22Q8NHS9 363 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 HTR3CQ8WXA8 447 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 KRT35Q92764 455 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SCARF2Q96GP6 870 aaPredicted RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 COX14Q96I36 57 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 AGAP2Q99490 1192 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SPATA16Q9BXB7 569 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SPATS2LQ9NUQ6 558 aaKnown RBP12.3□□□□□ -0.44
SS18-225ENST00000585121 VPS18Q9P253 973 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 IMPACTQ9P2X3 320 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 ZNHIT2Q9UHR6 403 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 TRHDEQ9UKU6 1024 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SATB2Q9UPW6 733 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 SHOC2Q9UQ13 582 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 PCDHA3Q9Y5H8 950 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 RNF215Q9Y6U7 377 aa12.3□□□□□ -0.44
SS18-225ENST00000585121 MACROD2A1Z1Q3 448 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 D6RAR5 112 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 APOC4-APOC2K7ER74 178 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 DXOO77932 396 aaKnown RBP12.29□□□□□ -0.44
SS18-225ENST00000585121 MT-CYBP00156 380 aaPredicted RBP12.29□□□□□ -0.44
SS18-225ENST00000585121 APOC2P02655 101 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 SLC4A1P02730 911 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 FUCA1P04066 466 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 FGF1P05230 155 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 PTMAP06454 111 aaKnown RBP12.29□□□□□ -0.44
SS18-225ENST00000585121 NFKB1P19838 968 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 AK4P27144 223 aaPredicted RBP12.29□□□□□ -0.44
SS18-225ENST00000585121 MARCKSL1P49006 195 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 INHBCP55103 352 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 KIF5AQ12840 1032 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 XRCC4Q13426 336 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 PYCR3Q53H96 274 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 ZNF569Q5MCW4 686 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 RAD9BQ6WBX8 426 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 ZNF248Q8NDW4 579 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 TADA1Q96BN2 335 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 QKIQ96PU8 341 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■■■■ 30.7
SS18-225ENST00000585121 ZSCAN5AQ9BUG6 496 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 RMI1Q9H9A7 625 aa12.29□□□□□ -0.44
SS18-225ENST00000585121 EPB41L5Q9HCM4 733 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms