RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TBC1D3FA6NER0 549 aaPredicted RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 CXorf49A8MYA2 514 aaPredicted RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3LB9A6J9 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 GOLGA8KD6RF30 607 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 POC1B-GALNT4F8VUJ3 575 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 GOLGA8TH3BQL2 631 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 RASGRF2O14827 1237 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 PI15O43692 258 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 PLXNA2O75051 1894 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 CDH16O75309 829 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 INHBAP08476 426 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3HP0C7X1 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 GM2AP17900 193 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 GP5P40197 560 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 CSE1LP55060 971 aaKnown RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 ZNF844Q08AG5 666 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TMEM259Q4ZIN3 620 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 ZRANB3Q5FWF4 1079 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 HENMT1Q5T8I9 393 aaKnown RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 RNF187Q5TA31 235 aaPredicted RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3GQ6DHY5 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 ZNF470Q6ECI4 717 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3CQ6IPX1 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 BMP8AQ7Z5Y6 402 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 FAM124AQ86V42 546 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 CILP2Q8IUL8 1156 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3Q8IZP1 549 aaPredicted RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 C2CD4AQ8NCU7 369 aaPredicted RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 ZNF398Q8TD17 642 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 AP2M1Q96CW1 435 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 PAFAH2Q99487 392 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 DHRS4Q9BTZ2 278 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 C1QTNF2Q9BXJ5 285 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 ABCG8Q9H221 673 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 ASB8Q9H765 288 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 SPATA6Q9NWH7 488 aaPredicted RBP10.69□□□□□ -0.7
SS18-213ENST00000579640 SMOXQ9NWM0 555 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 ZNF446Q9NWS9 450 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 IL1RAPL1Q9NZN1 696 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 ZNF180Q9UJW8 692 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 FBXO5Q9UKT4 447 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 CYP8B1Q9UNU6 501 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 LRRK1Q38SD2 2015 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TRBV5-4A0A0C4DH59 114 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 A0A1W2PQU0 124 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 IGLON5A6NGN9 336 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 OR51F1A6NGY5 319 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 AGAP14A8MT82 685 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 K7ESF4 209 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 GAPDHSO14556 408 aaPredicted RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 SEMA4FO95754 770 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 CNTFP26441 200 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 PMLP29590 882 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 CD6P30203 668 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 ACSL1P33121 698 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SLC1A2P43004 574 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TTPAP49638 278 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SERPINB9P50453 376 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SGCGQ13326 291 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 NFATC2Q13469 925 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 EFTUD2Q15029 972 aaKnown RBP eCLIP10.68□□□□□ -0.75e-13■■■■■ 88.9
SS18-213ENST00000579640 CHRNA6Q15825 494 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TYSND1Q2T9J0 566 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SETMARQ53H47 684 aaPredicted RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 CEP85LQ5SZL2 805 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 GRTP1Q5TC63 336 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 LGSNQ5TDP6 509 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 ADGRD1Q6QNK2 874 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 RFLNAQ6ZTI6 216 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TAOK1Q7L7X3 1001 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 OR2W6PQ8NHA6 318 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 AGAP2Q99490 1192 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 RIOK2Q9BVS4 552 aaKnown RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 SPATA16Q9BXB7 569 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 PCED1AQ9H1Q7 454 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 PRMT8Q9NR22 394 aaPredicted RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 INTS10Q9NVR2 710 aaKnown RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 WSB2Q9NYS7 404 aaPredicted RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 PSMC3IPQ9P2W1 217 aaPredicted RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 CD84Q9UIB8 345 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 CRLS1Q9UJA2 301 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 ZFR2Q9UPR6 939 aaKnown RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 FNDC3AQ9Y2H6 1198 aaKnown RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 COQ6Q9Y2Z9 468 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 CUL9Q8IWT3 2517 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TRPM6Q9BX84 2022 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 BDP1A6H8Y1 2624 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 GOLGA6L10A6NI86 522 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 C10orf142B7Z368 130 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 AXIN1O15169 862 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SASH3O75995 380 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TEAD1P28347 426 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SPRP35270 261 aaPredicted RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 NUDT1P36639 197 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 LEPRP48357 1165 aaKnown RBP10.68□□□□□ -0.7
SS18-213ENST00000579640 CCR5P51681 352 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 KRT71Q3SY84 523 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 SEL1L3Q68CR1 1132 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 PACS1Q6VY07 963 aa10.68□□□□□ -0.7
SS18-213ENST00000579640 TAS2R42Q7RTR8 314 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms