RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CTBP1Q13363 440 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 TUBA3CQ13748 450 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 CCL15Q16663 113 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 MEP1AQ16819 746 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 UGP2Q16851 508 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 PDZD4Q76G19 769 aaPredicted RBP9.56□□□□□ -0.88
CCDC40-212ENST00000574799 LINC00523Q86TU6 105 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 AQP12AQ8IXF9 295 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 COLGALT2Q8IYK4 626 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 CPSF7Q8N684 471 aaKnown RBP9.56□□□□□ -0.88
CCDC40-212ENST00000574799 ASCC1Q8N9N2 400 aaKnown RBP9.56□□□□□ -0.88
CCDC40-212ENST00000574799 TANKQ92844 425 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 TMEM176AQ96HP8 235 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 CDK5RAP1Q96SZ6 601 aaKnown RBP9.56□□□□□ -0.88
CCDC40-212ENST00000574799 TRIT1Q9H3H1 467 aaKnown RBP9.56□□□□□ -0.88
CCDC40-212ENST00000574799 PLAC1Q9HBJ0 212 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 ENTPD7Q9NQZ7 604 aa9.56□□□□□ -0.88
CCDC40-212ENST00000574799 UNCXA6NJT0 531 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ARPC2O15144 300 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ARHGEF9O43307 516 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 HCRTO43612 131 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 RASAL1O95294 804 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ITGB3P05106 788 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 STAG3L1P0CL83 205 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 MLNP12872 115 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 GFAPP14136 432 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 GOT1P17174 413 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 OXTRP30559 389 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 FPGSQ05932 587 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 PPP1R8Q12972 351 aaKnown RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 CCL14Q16627 93 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 DUSP28Q4G0W2 176 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 PRMT9Q6P2P2 845 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 SPESP1Q6UW49 350 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 P2RY8Q86VZ1 359 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 RDH11Q8TC12 318 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 KHSRPQ92945 711 aaKnown RBP eCLIP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 P2RY11Q96G91 374 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF670Q9BS34 389 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 TDRD1Q9BXT4 1180 aaKnown RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 YTHDF1Q9BYJ9 559 aaKnown RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 MAGEE1Q9HCI5 957 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 SCN3BQ9NY72 215 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 TSPAN16Q9UKR8 245 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 CHRM3P20309 590 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 NR2C2P49116 596 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ATXN1P54253 815 aaKnown RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 CDH13P55290 713 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 TAZQ16635 292 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 GOLGA7BQ2TAP0 167 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 PKDCCQ504Y2 493 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF534Q76KX8 674 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 CUZD1Q86UP6 607 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 HORMAD1Q86X24 394 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 NT5DC4Q86YG4 428 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 TBCBQ99426 244 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 RNF19AQ9NV58 838 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ANKRD6Q9Y2G4 727 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 PMF1-BGLAPU3KQ54 211 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 MBLAC1A4D2B0 266 aaPredicted RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 TFECO14948 347 aaPredicted RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 DYRK3O43781 588 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 CILPO75339 1184 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 INMTO95050 263 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 GPIP06744 558 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 MLLT10P55197 1068 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 E2F2Q14209 437 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 PRR23CQ6ZRP0 262 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 RAB44Q7Z6P3 723 aaPredicted RBP9.55□□□□□ -0.88
CCDC40-212ENST00000574799 ELMOD2Q8IZ81 293 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 MIER2Q8N344 545 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 GIPC2Q8TF65 315 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 LPIN3Q9BQK8 851 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 PRDM12Q9H4Q4 367 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 COL1A2P08123 1366 aa9.55□□□□□ -0.88
CCDC40-212ENST00000574799 FAM95CA0A1B0GW59 222 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 ASB14A6NK59 587 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 C2CD4BA6NLJ0 364 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 NOBOXO60393 691 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 SLC4A1P02730 911 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 INHBBP09529 407 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 GNG2P59768 71 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 TJAP1Q5JTD0 557 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF484Q5JVG2 852 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 C6orf10Q5SRN2 563 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 DEPDC4Q8N2C3 294 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 ADAMTS16Q8TE57 1224 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 TMEM246Q9BRR3 403 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 LHX5Q9H2C1 402 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 TRMT13Q9NUP7 481 aaKnown RBP9.54□□□□□ -0.88
CCDC40-212ENST00000574799 KIAA1522Q9P206 1035 aaPredicted RBP9.54□□□□□ -0.88
CCDC40-212ENST00000574799 BTBD3Q9Y2F9 522 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 SPTBN5Q9NRC6 3674 aaKnown RBP9.54□□□□□ -0.88
CCDC40-212ENST00000574799 LOC100506127A0A0U1RQW1 187 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 A0A1W2PQ67 120 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 ZNF99A8MXY4 864 aaPredicted RBP9.54□□□□□ -0.88
CCDC40-212ENST00000574799 FAM155AB1AL88 458 aaPredicted RBP9.54□□□□□ -0.88
CCDC40-212ENST00000574799 H3BRB1 525 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 MED26O95402 600 aa9.54□□□□□ -0.88
CCDC40-212ENST00000574799 CRYZL1O95825 349 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms