RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PTPRQQ9UMZ3 2332 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 FAM187AA6NFU0 413 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 ZNF500O60304 480 aaPredicted RBP20.53■□□□□ 0.88
VPS53-210ENST00000571456 DFNA5O60443 496 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 CLDN7O95471 211 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 TSHRP16473 764 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 TAF1AQ15573 450 aaPredicted RBP20.53■□□□□ 0.88
VPS53-210ENST00000571456 FAXCQ5TGI0 409 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 GLT6D1Q7Z4J2 308 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 TSPAN33Q86UF1 283 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 KLHL7Q8IXQ5 586 aa20.53■□□□□ 0.88
VPS53-210ENST00000571456 TP53I13Q8NBR0 393 aaPredicted RBP20.53■□□□□ 0.88
VPS53-210ENST00000571456 FRMD8Q9BZ67 464 aaPredicted RBP20.53■□□□□ 0.88
VPS53-210ENST00000571456 A0A087WV48 116 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 HOXC4P09017 264 aaPredicted RBP20.52■□□□□ 0.88
VPS53-210ENST00000571456 PTGIRP43119 386 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 CHRNA4P43681 627 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 SPINT3P49223 89 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 C21orf59P57076 290 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 PTK2BQ14289 1009 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 FAM182AQ5T1J6 154 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 PDPK2PQ6A1A2 396 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 DENND5AQ6IQ26 1287 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 LYSMD3Q7Z3D4 306 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 HSD11B1LQ7Z5J1 315 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 NAXDQ8IW45 347 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 OXR1Q8N573 874 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 DNAAF3Q8N9W5 541 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 MCUQ8NE86 351 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 BLOC1S5Q8TDH9 187 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 PEX13Q92968 403 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 KLHDC7BQ96G42 594 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 SLC6A18Q96N87 628 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 PLEKHG4BQ96PX9 1271 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 CASS4Q9NQ75 786 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 ASIC3Q9UHC3 531 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 PKP3Q9Y446 797 aa20.52■□□□□ 0.88
VPS53-210ENST00000571456 A0A1W2PR77 199 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 A8MX80 341 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 MLNP12872 115 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 LPOP22079 712 aaPredicted RBP20.51■□□□□ 0.87
VPS53-210ENST00000571456 ADCY8P40145 1251 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 KCNJ11Q14654 390 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 WSCD2Q2TBF2 565 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 GCNT7Q6ZNI0 430 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 Q6ZVL8 140 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 NLRP9Q7RTR0 991 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 ZNF605Q86T29 641 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 SLCO6A1Q86UG4 719 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 HOOK3Q86VS8 718 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 JAMLQ86YT9 394 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 PPIL6Q8IXY8 311 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 CEP112Q8N8E3 955 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 BBOF1Q8ND07 529 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 KLK6Q92876 244 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 AP2M1Q96CW1 435 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 KRT12Q99456 494 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 FAM83DQ9H4H8 585 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 ERVMER34-1Q9H9K5 563 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 XAB2Q9HCS7 855 aaKnown RBP20.51■□□□□ 0.87
VPS53-210ENST00000571456 RIMKLBQ9ULI2 386 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 KNL1Q8NG31 2342 aa20.51■□□□□ 0.87
VPS53-210ENST00000571456 SCN8AQ9UQD0 1980 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 TLR4O00206 839 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 ATXN7O15265 892 aaPredicted RBP20.5■□□□□ 0.87
VPS53-210ENST00000571456 USP12O75317 370 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 C1SP09871 688 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 GM2AP17900 193 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 KELP23276 732 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 TRIM23P36406 574 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 HADHAP40939 763 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 ETV3P41162 512 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 NPY2RP49146 381 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 PFN3P60673 137 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 SEMG2Q02383 582 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 IRF4Q15306 451 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 TRIP13Q15645 432 aaPredicted RBP20.5■□□□□ 0.87
VPS53-210ENST00000571456 DENND2CQ68D51 928 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 LRRC8BQ6P9F7 803 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 GLRX5Q86SX6 157 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 PRUNE1Q86TP1 453 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 TTC30BQ8N4P2 665 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 PTCD2Q8WV60 388 aaKnown RBP20.5■□□□□ 0.87
VPS53-210ENST00000571456 RANBP9Q96S59 729 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 APOL2Q9BQE5 337 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 ZSCAN5AQ9BUG6 496 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 IL22Q9GZX6 179 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 GPR27Q9NS67 375 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 BFARQ9NZS9 450 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 IL17CQ9P0M4 197 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 SHOC2Q9UQ13 582 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 COQ6Q9Y2Z9 468 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 SPO11Q9Y5K1 396 aa20.5■□□□□ 0.87
VPS53-210ENST00000571456 TP53BP1Q12888 1972 aaPredicted RBP20.49■□□□□ 0.87
VPS53-210ENST00000571456 HEATR9A2RTY3 570 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 CTAGE15A4D2H0 777 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 ESPNB1AK53 854 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 RAD51BO15315 384 aa20.49■□□□□ 0.87
VPS53-210ENST00000571456 STX7O15400 261 aaKnown RBP20.49■□□□□ 0.87
VPS53-210ENST00000571456 YKT6O15498 198 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms