RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 BBS12Q6ZW61 710 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 RAVER1Q8IY67 606 aaKnown RBP18.28■□□□□ 0.52
CLN3-214ENST00000565140 LRRC57Q8N9N7 239 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 KIAA1524Q8TCG1 905 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 COX14Q96I36 57 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 CALR3Q96L12 384 aaKnown RBP18.28■□□□□ 0.52
CLN3-214ENST00000565140 FAM83DQ9H4H8 585 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 C10orf88Q9H8K7 445 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 TRNAU1APQ9NX07 287 aaKnown RBP18.28■□□□□ 0.52
CLN3-214ENST00000565140 SHOC2Q9UQ13 582 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 ENTPD2Q9Y5L3 495 aa18.28■□□□□ 0.52
CLN3-214ENST00000565140 GRID2IPA4D2P6 1211 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 FADS2P1A8MWK0 482 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 NTN3O00634 580 aaPredicted RBP18.27■□□□□ 0.52
CLN3-214ENST00000565140 TCEA3O75764 348 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 FGF1P05230 155 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 PYGLP06737 847 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 NFKB1P19838 968 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 CDC25BP30305 580 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 PDX1P52945 283 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 CCL7P80098 99 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 HLTFQ14527 1009 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-214ENST00000565140 C14orf28Q4W4Y0 310 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 HENMT1Q5T8I9 393 aaKnown RBP18.27■□□□□ 0.52
CLN3-214ENST00000565140 MARK2Q7KZI7 788 aaKnown RBP18.27■□□□□ 0.52
CLN3-214ENST00000565140 ZNF567Q8N184 647 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 CCHCR1Q8TD31 782 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 HNRNPLLQ8WVV9 542 aaKnown RBP18.27■□□□□ 0.52
CLN3-214ENST00000565140 ATXN7L3BQ96GX2 97 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 QKIQ96PU8 341 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-214ENST00000565140 SYNDIG1Q9H7V2 258 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 ZFYVE1Q9HBF4 777 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 MAGEE1Q9HCI5 957 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 PKD2L2Q9NZM6 624 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 TAAR2Q9P1P5 351 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 TRIM10Q9UDY6 481 aa18.27■□□□□ 0.52
CLN3-214ENST00000565140 PCYT1BQ9Y5K3 369 aaPredicted RBP18.27■□□□□ 0.52
CLN3-214ENST00000565140 OAS3Q9Y6K5 1087 aaKnown RBP18.27■□□□□ 0.52
CLN3-214ENST00000565140 PTPRQQ9UMZ3 2332 aa18.27■□□□□ 0.51
CLN3-214ENST00000565140 BPTFQ12830 3046 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 A0A1W2PQM1 296 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 F5H423 210 aaPredicted RBP18.26■□□□□ 0.51
CLN3-214ENST00000565140 APOC4-APOC2K7ER74 178 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 NDST3O95803 873 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 APOC2P02655 101 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 ATP1A1P05023 1023 aaKnown RBP18.26■□□□□ 0.51
CLN3-214ENST00000565140 GLB1P16278 677 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 CTNNA2P26232 953 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 COPS2P61201 443 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 ILF3Q12906 894 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLN3-214ENST00000565140 PYCR3Q53H96 274 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 CERCAMQ5T4B2 595 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 AADACL2Q6P093 401 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 SLC30A9Q6PML9 568 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 KDELC1Q6UW63 502 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 TMC3Q7Z5M5 1100 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 KIAA1328Q86T90 577 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 Q8N9G6 341 aaPredicted RBP18.26■□□□□ 0.51
CLN3-214ENST00000565140 HTR3CQ8WXA8 447 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 ALG3Q92685 438 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 DESI2Q9BSY9 194 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 GSDMCQ9BYG8 508 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 IMPACTQ9P2X3 320 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 SPO11Q9Y5K1 396 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 RNF215Q9Y6U7 377 aa18.26■□□□□ 0.51
CLN3-214ENST00000565140 A0A087WV48 116 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 PMS2P1A4D2B8 440 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 RGSL1A5PLK6 1076 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 HACD1B0YJ81 288 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 AURKAO14965 403 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 MTSS1O43312 755 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 ASMTLO95671 621 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 RPLP0P05388 317 aaKnown RBP18.25■□□□□ 0.51
CLN3-214ENST00000565140 LSSP48449 732 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 WNT3AP56704 352 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 GABREP78334 506 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 SPIDRQ14159 915 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 NOMO1Q15155 1222 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 COL28A1Q2UY09 1125 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 PID1Q7Z2X4 250 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 C17orf82Q86X59 251 aaPredicted RBP18.25■□□□□ 0.51
CLN3-214ENST00000565140 GPR26Q8NDV2 337 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 OR6C4Q8NGE1 309 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 WDR48Q8TAF3 677 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 ZDHHC1Q8WTX9 485 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 PATE1Q8WXA2 126 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 OXNAD1Q96HP4 312 aaPredicted RBP18.25■□□□□ 0.51
CLN3-214ENST00000565140 DCBLD2Q96PD2 775 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 OSBPL8Q9BZF1 889 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 LRRN3Q9H3W5 708 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 POLR1BQ9H9Y6 1135 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 KLHL8Q9P2G9 620 aaPredicted RBP18.25■□□□□ 0.51
CLN3-214ENST00000565140 LRIT1Q9P2V4 623 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 FAM153AQ9UHL3 310 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 APPL1Q9UKG1 709 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 SATB2Q9UPW6 733 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 ZNF711Q9Y462 761 aa18.25■□□□□ 0.51
CLN3-214ENST00000565140 LOC285095A0A1B0GVY8 99 aa18.24■□□□□ 0.51
CLN3-214ENST00000565140 CCDC66A2RUB6 948 aa18.24■□□□□ 0.51
CLN3-214ENST00000565140 H7C0C1 242 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms