RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SLC22A18Q96BI1 424 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 NUDCD1Q96RS6 583 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 SF3B5Q9BWJ5 86 aaKnown RBP4.71□□□□□ -1.66
LINC00560-201ENST00000564593 PIGMQ9H3S5 423 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 MMP25Q9NPA2 562 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 ARHGEF38Q9NXL2 777 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 RPS6KL1Q9Y6S9 549 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 ARHGEF40Q8TER5 1519 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 DCAF1Q9Y4B6 1507 aa4.71□□□□□ -1.66
LINC00560-201ENST00000564593 ATXN2Q99700 1313 aaKnown RBP4.71□□□□□ -1.66
LINC00560-201ENST00000564593 hDV102S1A0JD36 115 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 LRRC72A6NJI9 287 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 SH2B2O14492 632 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 MITFO75030 526 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 EGFP01133 1207 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 ADRB2P07550 413 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 C21orf33P30042 268 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 CDC16Q13042 620 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 PCLAFQ15004 111 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 ZNF805Q5CZA5 627 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 DAB2IPQ5VWQ8 1189 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 PRPF39Q86UA1 669 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 KBTBD6Q86V97 674 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 TICAM2Q86XR7 235 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 LINC00346Q8IVM7 164 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 EGLN2Q96KS0 407 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 C1QTNF7Q9BXJ2 289 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 EBF3Q9H4W6 596 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 C17orf75Q9HAS0 396 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 EXO1Q9UQ84 846 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 SYNDIG1LA6NDD5 238 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 M0QZ24 198 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 NDUFS7O75251 213 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 SERPINI2O75830 405 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 TOMM40O96008 361 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 DNTTP04053 509 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 ICAM1P05362 532 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 CDC25AP30304 524 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 LMAN1P49257 510 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 HSD17B4P51659 736 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 PGGT1BP53609 377 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 CSNK2A1P68400 391 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 Q0VFX4 171 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 GRSF1Q12849 480 aaKnown RBP eCLIP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 KCNC3Q14003 757 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 RARS2Q5T160 578 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 DUS1LQ6P1R4 473 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 KCTD18Q6PI47 426 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 FOXRED2Q8IWF2 684 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 SCYL3Q8IZE3 742 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 NEXN-AS1Q8NBZ9 246 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 CSNK2A3Q8NEV1 391 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 TRPC4APQ8TEL6 797 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 PRPF31Q8WWY3 499 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 APBB2Q92870 758 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 LRRC59Q96AG4 307 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 ORAI1Q96D31 301 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 SLC25A33Q9BSK2 321 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 OSGEPL1Q9H4B0 414 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 EPB41L5Q9HCM4 733 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 PAG1Q9NWQ8 432 aa4.7□□□□□ -1.66
LINC00560-201ENST00000564593 UBA2Q9UBT2 640 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 AGO1Q9UL18 857 aaKnown RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 MAGED1Q9Y5V3 778 aaPredicted RBP4.7□□□□□ -1.66
LINC00560-201ENST00000564593 ZNF644Q9H582 1327 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 KANSL1LA0AUZ9 987 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 PAPSS1O43252 624 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 MMP9P14780 707 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 SCP2P22307 547 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 BDKRB2P30411 391 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 MSH2P43246 934 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 PCYT1AP49585 367 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 GPR143P51810 404 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 STAT2P52630 851 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 FOXM1Q08050 763 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 DSC1Q08554 894 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 SREBF2Q12772 1141 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 CTF1Q16619 201 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 AMZ1Q400G9 498 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 TDRD12Q587J7 1177 aaKnown RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 GARNL3Q5VVW2 1013 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 NAA16Q6N069 864 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 C1QL2Q7Z5L3 287 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 DNAAF5Q86Y56 855 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 EPHX4Q8IUS5 362 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 ARID3BQ8IVW6 561 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 APPL2Q8NEU8 664 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 OR1J2Q8NGS2 313 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 HM13Q8TCT9 377 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 NSMCE1Q8WV22 266 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 ADAMTS14Q8WXS8 1223 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 GRAMD2BQ96HH9 432 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 ZNF48Q96MX3 618 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 PAFAH2Q99487 392 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 KIFC3Q9BVG8 833 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 MAGIXQ9H6Y5 334 aa4.69□□□□□ -1.66
LINC00560-201ENST00000564593 SEBOXQ9HB31 216 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 WSB2Q9NYS7 404 aaPredicted RBP4.69□□□□□ -1.66
LINC00560-201ENST00000564593 CPSF2Q9P2I0 782 aaKnown RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms