RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DHRSXQ8N5I4 330 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 PACRGLQ8N7B6 248 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 RTL3Q8N8U3 475 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 IMP4Q96G21 291 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 FEM1CQ96JP0 617 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 C1orf50Q9BV19 199 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 ZNF236Q9UL36 1845 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CLASP2O75122 1294 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 ATP6V1G1O75348 118 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CRCPO75575 148 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 RASAL1O95294 804 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 PEX11BO96011 259 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 POMCP01189 267 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 LBPP18428 481 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 EEF1B2P24534 225 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 PRDX3P30048 256 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 TIAL1Q01085 375 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLN3-210ENST00000563874 LIPEQ05469 1076 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 SEMA3AQ14563 771 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CYBRD1Q53TN4 286 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 SDHAF4Q5VUM1 108 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 TBPL2Q6SJ96 375 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 ABRAXAS1Q6UWZ7 409 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 OR10T2Q8NGX3 314 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 PSMG2Q969U7 264 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 ESAMQ96AP7 390 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 KCTD14Q9BQ13 255 aaPredicted RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 AGO3Q9H9G7 860 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 NMUR1Q9HB89 426 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 SDR39U1Q9NRG7 319 aaPredicted RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 GID8Q9NWU2 228 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 SMPD3Q9NY59 655 aaPredicted RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 TUBA8Q9NY65 449 aaPredicted RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 DOLKQ9UPQ8 538 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 FAM50BQ9Y247 325 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 ZFC3H1O60293 1989 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 ARL5CA6NH57 179 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 TRIM64CA6NLI5 447 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 F8W810 466 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CNTN5O94779 1100 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 WISP3O95389 354 aaPredicted RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 MMP2P08253 660 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 IMPDH2P12268 514 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 EEF1DP29692 281 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 PSEN2P49810 448 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 ADAM17P78536 824 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 BNIP2Q12982 314 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 MARC1Q5VT66 337 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 IQSEC1Q6DN90 963 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 OGFOD2Q6N063 350 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 BLOC1S3Q6QNY0 202 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 Q6ZNX1 250 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 TLK2Q86UE8 772 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 CROCCP3Q8IVE0 287 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 OR13C4Q8NGS5 318 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 TMEM125Q96AQ2 219 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 FAM105AQ9NUU6 356 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 FAIMQ9NVQ4 179 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 PTBP2Q9UKA9 531 aaKnown RBP13.16□□□□□ -0.3
CLN3-210ENST00000563874 PCDHA9Q9Y5H5 950 aa13.16□□□□□ -0.3
CLN3-210ENST00000563874 NYNRINQ9P2P1 1898 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 ASPDHA6ND91 283 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 SUPT3HB4E1H0 165 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 SLC7A4O43246 635 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 GOT2P00505 430 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 SLC2A3P11169 496 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 ZNF182P17025 639 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 ELK4P28324 431 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 CYP2C18P33260 490 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 RFC2P35250 354 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 POLR2IP36954 125 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 RPS9P46781 194 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 CCR3P51677 355 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 EIF4EBP2Q13542 120 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 POLD3Q15054 466 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 TMTC4Q5T4D3 741 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 TMEM214Q6NUQ4 689 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 C16orf87Q6PH81 154 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 RAB44Q7Z6P3 723 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 GABPB2Q8TAK5 448 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 NUDT8Q8WV74 236 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 MFSD1Q9H3U5 465 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 ARNT2Q9HBZ2 717 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 SLC38A7Q9NVC3 462 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 INTS7Q9NVH2 962 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 MAGED1Q9Y5V3 778 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 OAS3Q9Y6K5 1087 aaKnown RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 TANC1Q9C0D5 1861 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 UBA6A0AVT1 1052 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 UNCXA6NJT0 531 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 J3QRK9 145 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 OR4Q2P0C623 313 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 ZNF37AP17032 561 aaPredicted RBP13.15□□□□□ -0.3
CLN3-210ENST00000563874 HOXC13P31276 330 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 GRIK1P39086 918 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 CAPGP40121 348 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 UFM1P61960 85 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 PLIN5Q00G26 463 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 PLA2G4EQ3MJ16 856 aa13.15□□□□□ -0.3
CLN3-210ENST00000563874 TIGD2Q4W5G0 525 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms