RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ABCG4Q9H172 646 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 GBA3Q9H227 469 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 CARS2Q9HA77 564 aaKnown RBP13.33□□□□□ -0.28
CLK3-213ENST00000563842 TRNAU1APQ9NX07 287 aaKnown RBP13.33□□□□□ -0.28
CLK3-213ENST00000563842 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLK3-213ENST00000563842 SLC17A4Q9Y2C5 497 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 ZNF711Q9Y462 761 aa13.33□□□□□ -0.28
CLK3-213ENST00000563842 ASMTLO95671 621 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 FGF1P05230 155 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 CEACAM5P06731 702 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 PROS1P07225 676 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 DCDC1P59894 354 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 CCZ1BP86790 482 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 CCZ1P86791 482 aaPredicted RBP13.32□□□□□ -0.28
CLK3-213ENST00000563842 ILF3Q12906 894 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLK3-213ENST00000563842 KLF1Q13351 362 aaPredicted RBP13.32□□□□□ -0.28
CLK3-213ENST00000563842 SLC1A5Q15758 541 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 HENMT1Q5T8I9 393 aaKnown RBP13.32□□□□□ -0.28
CLK3-213ENST00000563842 ZDHHC20Q5W0Z9 365 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 PDPK2PQ6A1A2 396 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 RFLNAQ6ZTI6 216 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 ARL10Q8N8L6 244 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 IPMKQ8NFU5 416 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 WDR48Q8TAF3 677 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 IFI44Q8TCB0 444 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 GATA6Q92908 595 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 MRGPRX2Q96LB1 330 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 SPATA13Q96N96 652 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 ZSCAN5AQ9BUG6 496 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 CAAP1Q9H8G2 361 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 LZTFL1Q9NQ48 299 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 MRPL40Q9NQ50 206 aaKnown RBP13.32□□□□□ -0.28
CLK3-213ENST00000563842 NFKBIL1Q9UBC1 381 aaPredicted RBP13.32□□□□□ -0.28
CLK3-213ENST00000563842 GULP1Q9UBP9 304 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 PADI4Q9UM07 663 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 GPR34Q9UPC5 381 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 SHOC2Q9UQ13 582 aa13.32□□□□□ -0.28
CLK3-213ENST00000563842 LY6G6EA0A0G2JKS1 128 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 CPED1A4D0V7 1026 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 C5orf60A6NFR6 353 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 SOD1P00441 154 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 PIRTP0C851 137 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 HMGCLP35914 325 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 GNPDA1P46926 289 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 SIRPB2Q5JXA9 342 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 HES3Q5TGS1 186 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 MEI1Q5TIA1 1274 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 EFL1Q7Z2Z2 1120 aaKnown RBP13.31□□□□□ -0.28
CLK3-213ENST00000563842 SLC35F3Q8IY50 421 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 TRAM1L1Q8N609 369 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
CLK3-213ENST00000563842 FAM46DQ8NEK8 389 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 MAPK15Q8TD08 544 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 GPBAR1Q8TDU6 330 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 OXNAD1Q96HP4 312 aaPredicted RBP13.31□□□□□ -0.28
CLK3-213ENST00000563842 COX14Q96I36 57 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 SPATA16Q9BXB7 569 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 TMEM168Q9H0V1 697 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 CARD9Q9H257 536 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 RMI1Q9H9A7 625 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 VPS18Q9P253 973 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 SUFUQ9UMX1 484 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 U3KQA8 63 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 ACACAQ13085 2346 aa13.31□□□□□ -0.28
CLK3-213ENST00000563842 C1QTNF9BB2RNN3 333 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 INPP4BO15327 924 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 PSMD3O43242 534 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 OPA1O60313 960 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 PPFIA2O75334 1257 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 SLC4A1P02730 911 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 CELA2BP08218 269 aaPredicted RBP13.3□□□□□ -0.28
CLK3-213ENST00000563842 C1QTNF9P0C862 333 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 STIP1P31948 543 aaKnown RBP13.3□□□□□ -0.28
CLK3-213ENST00000563842 INSM1Q01101 510 aaPredicted RBP13.3□□□□□ -0.28
CLK3-213ENST00000563842 LRP8Q14114 963 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 PARP6Q2NL67 630 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 ZNF569Q5MCW4 686 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 FAM182AQ5T1J6 154 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 GUSBP11Q6P575 273 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 OGFOD3Q6PK18 319 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 DOK6Q6PKX4 331 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 ARHGEF18Q6ZSZ5 1173 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 GALNT13Q8IUC8 556 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 SLC25A41Q8N5S1 370 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 MAIP1Q8WWC4 291 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 SCARF2Q96GP6 870 aaPredicted RBP13.3□□□□□ -0.28
CLK3-213ENST00000563842 PLEKHG4BQ96PX9 1271 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 OR2M4Q96R27 311 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 WDR24Q96S15 920 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 AGAP2Q99490 1192 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 FAM118BQ9BPY3 351 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 TMEM121BQ9BXQ6 578 aaPredicted RBP13.3□□□□□ -0.28
CLK3-213ENST00000563842 DPEP2Q9H4A9 486 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 C10orf88Q9H8K7 445 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 SIRPGQ9P1W8 387 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 FEZ2Q9UHY8 353 aaPredicted RBP13.3□□□□□ -0.28
CLK3-213ENST00000563842 CLCA2Q9UQC9 943 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 PPP2R2CQ9Y2T4 447 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 GPSM3Q9Y4H4 160 aa13.3□□□□□ -0.28
CLK3-213ENST00000563842 GPR89AB7ZAQ6 455 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms