RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PGFP49763 221 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ZNF252P-AS1Q0IIN9 211 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ELAVL3Q14576 367 aaKnown RBP9.21□□□□□ -0.93
VPS39-205ENST00000562258 SLC1A5Q15758 541 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 XKR4Q5GH76 650 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 IRGCQ6NXR0 463 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 DNAJC14Q6Y2X3 702 aaPredicted RBP9.21□□□□□ -0.93
VPS39-205ENST00000562258 UBE2R2Q712K3 238 aaPredicted RBP9.21□□□□□ -0.93
VPS39-205ENST00000562258 CPNE9Q8IYJ1 553 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 OSCP1Q8WVF1 389 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 NUS1Q96E22 293 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 KLHL25Q9H0H3 589 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 POMKQ9H5K3 350 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 GDF3Q9NR23 364 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 THEGQ9P2T0 379 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 XPR1Q9UBH6 696 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ITM2BQ9Y287 266 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 SPACA6W5XKT8 324 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 AKAP10O43572 662 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 KRT6AP02538 564 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 KRT6BP04259 564 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 ABCB1P08183 1280 aaPredicted RBP9.21□□□□□ -0.94
VPS39-205ENST00000562258 ALADP13716 330 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 KRT6CP48668 564 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 HCAR3P49019 387 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 FOXM1Q08050 763 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 ZNF844Q08AG5 666 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 GALNT2Q10471 571 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 NAE1Q13564 534 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 BRAT1Q6PJG6 821 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 PACS1Q6VY07 963 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 NLRP14Q86W24 1093 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 TEX9Q8N6V9 391 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 BEND7Q8N7W2 519 aaPredicted RBP9.21□□□□□ -0.94
VPS39-205ENST00000562258 CDYL2Q8N8U2 506 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 GPR156Q8NFN8 814 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 MAGEC3Q8TD91 643 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 RUBCNQ92622 972 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 ART4Q93070 314 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 CHFRQ96EP1 664 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 CDKN2AIPNLQ96HQ2 116 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 KLC4Q9NSK0 619 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 V9GYQ6 96 aa9.21□□□□□ -0.94
VPS39-205ENST00000562258 A0A1W2PPM1 405 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CCDC160A6NGH7 325 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 A8MU76 341 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RECQL5O94762 991 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 ANXA6P08133 673 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PDHA1P08559 390 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 LTA4HP09960 611 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 HNRNPLP14866 589 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS39-205ENST00000562258 CNTFP26441 200 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 SERPINB4P48594 390 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 ARRB1P49407 418 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 CLCN5P51795 746 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 TDGQ13569 410 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RFTN1Q14699 578 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 TSNAXIP1Q2TAA8 658 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 SPATA21Q7Z572 469 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 NKAPQ8N5F7 415 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 C1orf74Q96LT6 269 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 C12orf66Q96MD2 445 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 NUF2Q9BZD4 464 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 NEUROG2Q9H2A3 272 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PARVBQ9HBI1 364 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CSNK1G1Q9HCP0 422 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 MIEF1Q9NQG6 463 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 GIMAP4Q9NUV9 329 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PSD3Q9NYI0 1048 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 TBC1D30Q9Y2I9 924 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 ZW10O43264 779 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 F11P03951 625 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CDH3P22223 829 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RPA3P35244 121 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 ETV3P41162 512 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RAB10P61026 200 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 DMC1Q14565 340 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 FAM45BPQ6NSW5 357 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 HIBCHQ6NVY1 386 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 ERN2Q76MJ5 926 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 GPR149Q86SP6 731 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 FAM45AQ8TCE6 357 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 SELENOMQ8WWX9 145 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 LCN9Q8WX39 176 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CCDC126Q96EE4 140 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CDYLQ9Y232 598 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 QSER1Q2KHR3 1735 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 NUP205Q92621 2012 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 IGLON5A6NGN9 336 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 SDC3O75056 442 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 NIPSNAP2O75323 286 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 SEC22BO75396 215 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 DCTN3O75935 186 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 ABLIM3O94929 683 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 WDR47O94967 919 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CPSF4O95639 269 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 ZNF8P17098 575 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 CLCNKAP51800 687 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 ZNF234Q14588 700 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PGS1Q32NB8 556 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms