RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DHX9Q08211 1270 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 ILF2Q12905 390 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 SRSF5Q13243 272 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 THOC5Q13769 683 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 IRF4Q15306 451 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 WSCD2Q2TBF2 565 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 CCDC38Q502W7 563 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 FASTKD1Q53R41 847 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 AARS2Q5JTZ9 985 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 SPANXN3Q5MJ09 141 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 FNBP1LQ5T0N5 605 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 PNCKQ6P2M8 343 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 AFTPHQ6ULP2 937 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 KYAT3Q6YP21 454 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 SNX20Q7Z614 316 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 SDCCAG8Q86SQ7 713 aaPredicted RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 CCDC25Q86WR0 208 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 LMNTD2Q8IXW0 634 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 TP53I13Q8NBR0 393 aaPredicted RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 OR6P1Q8NGX9 317 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 FBXO25Q8TCJ0 367 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 SCG3Q8WXD2 468 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 PIGKQ92643 395 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 SGSM3Q96HU1 749 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 TTC25Q96NG3 672 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 SMIM14Q96QK8 99 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 HINFPQ9BQA5 517 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 RIOK2Q9BVS4 552 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 ASB8Q9H765 288 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 SAYSD1Q9NPB0 183 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 CHRAC1Q9NRG0 131 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 ZC3H7BQ9UGR2 993 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 CD84Q9UIB8 345 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 RPS6KL1Q9Y6S9 549 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 FAM169AQ9Y6X4 670 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 R4GN57 208 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 ADAMTS9Q9P2N4 1935 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 ARHGEF17Q96PE2 2063 aaPredicted RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 FAM186AA6NE01 2351 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 GOLGA8CPA6NN73 597 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 BUD23O43709 281 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 SRP72O76094 671 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 EPN2O95208 641 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 PCCBP05166 539 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 RETP07949 1114 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 SYPP08247 313 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 RALBP11234 206 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ITPKAP23677 461 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 TNFRSF8P28908 595 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 MC4RP32245 332 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 TRIM23P36406 574 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ELK3P41970 407 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 PTGER3P43115 390 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 MAGEA4P43358 317 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 CARSP49589 748 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 CRADDP78560 199 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 TMPRSS15P98073 1019 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ACVR1Q04771 509 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 FGL2Q14314 439 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 PTPRRQ15256 657 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 LONRF1Q17RB8 773 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ANKRD20A4Q4UJ75 823 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZRANB3Q5FWF4 1079 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 LDLRAP1Q5SW96 308 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 HENMT1Q5T8I9 393 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 RIF1Q5UIP0 2472 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 ALS2CLQ60I27 953 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 KIAA0930Q6ICG6 404 aaPredicted RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 MRNIPQ6NTE8 343 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZDHHC24Q6UX98 284 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ADAMTSL4Q6UY14 1074 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 CERS6Q6ZMG9 384 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ARMCX6Q7L4S7 300 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ABI3BPQ7Z7G0 1075 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 TMEM135Q86UB9 458 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZBED8Q8IZ13 594 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 MPP5Q8N3R9 675 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 OXR1Q8N573 874 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 TMEM145Q8NBT3 493 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.18□□□□□ -0.94
LDLR-210ENST00000559340 GPR26Q8NDV2 337 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 OR13C4Q8NGS5 318 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 OR4L1Q8NH43 312 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 HDAC10Q969S8 669 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZNF669Q96BR6 464 aaPredicted RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 EID2BQ96D98 161 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 DCUN1D1Q96GG9 259 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 HIC2Q96JB3 615 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 DNAJC1Q96KC8 554 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 TBATAQ96M53 351 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 VPS35Q96QK1 796 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 KLF6Q99612 283 aaPredicted RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 APOOQ9BUR5 198 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZDHHC5Q9C0B5 715 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZCCHC2Q9C0B9 1178 aaKnown RBP9.18□□□□□ -0.94
LDLR-210ENST00000559340 WDR26Q9H7D7 661 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 IL26Q9NPH9 171 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 ZDHHC18Q9NUE0 388 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 FKBPLQ9UIM3 349 aa9.18□□□□□ -0.94
LDLR-210ENST00000559340 CRLS1Q9UJA2 301 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms